/usr/share/wise/gon250.bla is in wise-data 2.4.1-20.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 | # benner-gonnet matrix
# pam := 250
# print (DayhoffM (NewLogPAM1, pam));
# DayMatrix(Peptide, pam=250, Simil: max=14.152, min=-5.161, max offdiag=5.080,
# del=-19.814-1.396*(k-1))
A R N D C Q E G H I L K M F P S T W Y V *
2.4 -0.6 -0.3 -0.3 0.5 -0.2 0.0 0.5 -0.8 -0.8 -1.2 -0.4 -0.7 -2.3 0.3 1.1 0.6 -3.6 -2.2 0.1 -5.2
-0.6 4.7 0.3 -0.3 -2.2 1.5 0.4 -1.0 0.6 -2.4 -2.2 2.7 -1.7 -3.2 -0.9 -0.2 -0.2 -1.6 -1.8 -2.0 -5.2
-0.3 0.3 3.8 2.2 -1.8 0.7 0.9 0.4 1.2 -2.8 -3.0 0.8 -2.2 -3.1 -0.9 0.9 0.5 -3.6 -1.4 -2.2 -5.2
-0.3 -0.3 2.2 4.7 -3.2 0.9 2.7 0.1 0.4 -3.8 -4.0 0.5 -3.0 -4.5 -0.7 0.5 0.0 -5.2 -2.8 -2.9 -5.2
0.5 -2.2 -1.8 -3.2 11.5 -2.4 -3.0 -2.0 -1.3 -1.1 -1.5 -2.8 -0.9 -0.8 -3.1 0.1 -0.5 -1.0 -0.5 0.0 -5.2
-0.2 1.5 0.7 0.9 -2.4 2.7 1.7 -1.0 1.2 -1.9 -1.6 1.5 -1.0 -2.6 -0.2 0.2 0.0 -2.7 -1.7 -1.5 -5.2
0.0 0.4 0.9 2.7 -3.0 1.7 3.6 -0.8 0.4 -2.7 -2.8 1.2 -2.0 -3.9 -0.5 0.2 -0.1 -4.3 -2.7 -1.9 -5.2
0.5 -1.0 0.4 0.1 -2.0 -1.0 -0.8 6.6 -1.4 -4.5 -4.4 -1.1 -3.5 -5.2 -1.6 0.4 -1.1 -4.0 -4.0 -3.3 -5.2
-0.8 0.6 1.2 0.4 -1.3 1.2 0.4 -1.4 6.0 -2.2 -1.9 0.6 -1.3 -0.1 -1.1 -0.2 -0.3 -0.8 2.2 -2.0 -5.2
-0.8 -2.4 -2.8 -3.8 -1.1 -1.9 -2.7 -4.5 -2.2 4.0 2.8 -2.1 2.5 1.0 -2.6 -1.8 -0.6 -1.8 -0.7 3.1 -5.2
-1.2 -2.2 -3.0 -4.0 -1.5 -1.6 -2.8 -4.4 -1.9 2.8 4.0 -2.1 2.8 2.0 -2.3 -2.1 -1.3 -0.7 0.0 1.8 -5.2
-0.4 2.7 0.8 0.5 -2.8 1.5 1.2 -1.1 0.6 -2.1 -2.1 3.2 -1.4 -3.3 -0.6 0.1 0.1 -3.5 -2.1 -1.7 -5.2
-0.7 -1.7 -2.2 -3.0 -0.9 -1.0 -2.0 -3.5 -1.3 2.5 2.8 -1.4 4.3 1.6 -2.4 -1.4 -0.6 -1.0 -0.2 1.6 -5.2
-2.3 -3.2 -3.1 -4.5 -0.8 -2.6 -3.9 -5.2 -0.1 1.0 2.0 -3.3 1.6 7.0 -3.8 -2.8 -2.2 3.6 5.1 0.1 -5.2
0.3 -0.9 -0.9 -0.7 -3.1 -0.2 -0.5 -1.6 -1.1 -2.6 -2.3 -0.6 -2.4 -3.8 7.6 0.4 0.1 -5.0 -3.1 -1.8 -5.2
1.1 -0.2 0.9 0.5 0.1 0.2 0.2 0.4 -0.2 -1.8 -2.1 0.1 -1.4 -2.8 0.4 2.2 1.5 -3.3 -1.9 -1.0 -5.2
0.6 -0.2 0.5 0.0 -0.5 0.0 -0.1 -1.1 -0.3 -0.6 -1.3 0.1 -0.6 -2.2 0.1 1.5 2.5 -3.5 -1.9 0.0 -5.2
-3.6 -1.6 -3.6 -5.2 -1.0 -2.7 -4.3 -4.0 -0.8 -1.8 -0.7 -3.5 -1.0 3.6 -5.0 -3.3 -3.5 14.2 4.1 -2.6 -5.2
-2.2 -1.8 -1.4 -2.8 -0.5 -1.7 -2.7 -4.0 2.2 -0.7 0.0 -2.1 -0.2 5.1 -3.1 -1.9 -1.9 4.1 7.8 -1.1 -5.2
0.1 -2.0 -2.2 -2.9 0.0 -1.5 -1.9 -3.3 -2.0 3.1 1.8 -1.7 1.6 0.1 -1.8 -1.0 0.0 -2.6 -1.1 3.4 -5.2
-5.2 -5.2 -5.2 -5.2 -5.2 -5.2 -5.2 -5.2 -5.2 -5.2 -5.2 -5.2 -5.2 -5.2 -5.2 -5.2 -5.2 -5.2 -5.2 -5.2 1
|