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Crossmatches table on sky position against SQL table</a><br>
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Crossmatches table on sky position against SQL table</a><br>
<hr>
<h3><a name="sqlskymatch-usage">B.18.1 Usage</a></h3>
<p>The usage of <code>sqlskymatch</code> is
<pre>
stilts <stilts-flags> sqlskymatch ifmt=<in-format> istream=true|false
icmd=<cmds> ocmd=<cmds>
omode=out|meta|stats|count|cgi|discard|topcat|samp|tosql|gui
out=<out-table> ofmt=<out-format>
ra=<expr> dec=<expr> sr=<expr/deg>
find=best|all|each usefoot=true|false
footnside=<int-value>
copycols=<colid-list> scorecol=<col-name>
erract=abort|ignore|retry|retry<n>
ostream=true|false fixcols=none|dups|all
suffix0=<label> suffix1=<label>
db=<jdbc-url> user=<value>
password=<value> dbtable=<table-name>
dbra=<sql-col> dbdec=<sql-col>
dbunit=deg|rad
tiling=hpx<K>|healpixnest<K>|healpixring<K>|htm<K>
dbtile=<sql-col> selectcols=<sql-cols>
where=<sql-condition>
preparesql=true|false
[in=]<table>
</pre>
If you don't have the <code>stilts</code> script installed,
write "<code>java -jar stilts.jar</code>" instead of
"<code>stilts</code>" - see <a href="invoke.html">Section 3</a>.
The available <code><stilts-flags></code> are listed
in <a href="stilts-flags.html">Section 2.1</a>.
For programmatic invocation, the Task class for this
command is <code>uk.ac.starlink.ttools.task.SqlCone</code>.
</p>
<p>Parameter values are assigned on the command line
as explained in <a href="task-args.html">Section 2.3</a>.
They are as follows:
</p>
<p>
<dl>
<dt><strong><code>copycols = <colid-list></code> <em>(String)</em></strong></dt>
<dd>List of columns from the input table which are to be copied
to the output table.
Each column identified here will be prepended to the
columns of the combined output table,
and its value for each row taken from the input table row
which provided the parameters of the query which produced it.
See <a href="colid-list.html">Section 6.3</a> for list syntax.
The default setting is "<code>*</code>", which means that
all columns from the input table are included in the output.
<p>[Default: <code>*</code>]
</p>
</dd>
<dt><strong><code>db = <jdbc-url></code> <em>(<a href="http://docs.oracle.com/javase/6/docs/api/java/sql/Connection.html">Connection</a>)</em></strong></dt>
<dd>URL which defines a connection to a database.
This has the form
<code>jdbc:<subprotocol>:<subname></code>
- the details are database- and driver-dependent.
Consult Sun's JDBC documentation and that for the particular
JDBC driver you are using for details.
Note that the relevant driver class will need to be on your
classpath and referenced in the <code>jdbc.drivers</code>
system property as well for the connection to be made.
</dd>
<dt><strong><code>dbdec = <sql-col></code> <em>(String)</em></strong></dt>
<dd>The name of a column in the SQL database table
<code>dbtable</code>
which gives the declination.
Units are given by <code>dbunit</code>.
</dd>
<dt><strong><code>dbra = <sql-col></code> <em>(String)</em></strong></dt>
<dd>The name of a column in the SQL database table
<code>dbtable</code>
which gives the right ascension.
Units are given by <code>dbunit</code>.
</dd>
<dt><strong><code>dbtable = <table-name></code> <em>(String)</em></strong></dt>
<dd>The name of the table in the SQL database which provides
the remote data.
</dd>
<dt><strong><code>dbtile = <sql-col></code> <em>(String)</em></strong></dt>
<dd>The name of a column in the SQL database table
<code>dbtable</code>
which contains a sky tiling pixel index.
The tiling scheme is given by the tiling
parameter.
Use of a tiling column is optional, but if present
(and if the column is indexed in the database table)
it may serve to speed up searches.
Set to null if the database table contains no tiling column
or if you do not wish to use one.
</dd>
<dt><strong><code>dbunit = deg|rad</code> <em>(<a href="http://andromeda.star.bris.ac.uk/starjavadocs/uk/ac/starlink/ttools/cone/AngleUnits.html">AngleUnits</a>)</em></strong></dt>
<dd>Units of the right ascension and declination columns
identified in the database table.
May be either deg[rees] (the default) or rad[ians].
<p>[Default: <code>deg</code>]
</p>
</dd>
<dt><strong><code>dec = <expr></code> <em>(String)</em></strong></dt>
<dd>Declination in degrees in the coordinate system
for the position of each row of the input table.
This may simply be a column name, or it may be an
algebraic expression calculated from columns as explained
in <a href="jel.html">Section 10</a>.
If left blank, an attempt is made to guess from UCDs,
column names and unit annotations what expression to use.
</dd>
<dt><strong><code>erract = abort|ignore|retry|retry<n></code> <em>(<a href="http://andromeda.star.bris.ac.uk/starjavadocs/uk/ac/starlink/ttools/cone/ConeErrorPolicy.html">ConeErrorPolicy</a>)</em></strong></dt>
<dd>Determines what will happen if any of the individual cone
search requests fails. By default the task aborts.
That may be the best thing to do, but for unreliable or
poorly implemented services you may find that some searches
fail and others succeed so it can be best to continue
operation in the face of a few failures.
The options are:
<ul>
<li><code>abort</code>:
failure of any query terminates the task
</li>
<li><code>ignore</code>:
failure of a query is treated the same as a query which
returns no rows
</li>
<li><code>retry</code>:
failed queries are retried until they succeed;
use with care - if the failure is for some good, or at least
reproducible reason this could prevent the task from ever
completing
</li>
<li><code>retry<n></code>:
failed queries are retried at most a fixed number
<code><n></code> of times
If they still fail the task terminates.
</li>
</ul>
<p>[Default: <code>abort</code>]
</p>
</dd>
<dt><strong><code>find = best|all|each</code> <em>(String)</em></strong></dt>
<dd>Determines which matches are retained.
<ul>
<li><code>best</code>:
Only the matching query table row closest to
the input table row will be output.
Input table rows with no matches will be omitted.
(Note this corresponds to the
<code>best1</code>
option in the pair matching commands, and <code>best1</code>
is a permitted alias).
</li>
<li><code>all</code>:
All query table rows which match
the input table row will be output.
Input table rows with no matches will be omitted.
</li>
<li><code>each</code>:
There will be one output table row for each input table row.
If matches are found, the closest one from the query table
will be output, and in the case of no matches,
the query table columns will be blank.
</li>
</ul>
<p>[Default: <code>all</code>]
</p>
</dd>
<dt><strong><code>fixcols = none|dups|all</code> <em>(<a href="http://andromeda.star.bris.ac.uk/starjavadocs/uk/ac/starlink/ttools/task/JoinFixActionParameter.Fixer.html">Fixer</a>)</em></strong></dt>
<dd>Determines how input columns are renamed before
use in the output table. The choices are:
<ul>
<li><code>none</code>: columns are not renamed
</li>
<li><code>dups</code>: columns which would otherwise have duplicate names in the output will be renamed
to indicate which table they came from
</li>
<li><code>all</code>: all columns will be renamed to indicate which table they came from
</li>
</ul>
If columns are renamed, the new ones are determined
by <code>suffix*</code> parameters.
<p>[Default: <code>dups</code>]
</p>
</dd>
<dt><strong><code>footnside = <int-value></code> <em>(Integer)</em></strong></dt>
<dd>Determines the HEALPix Nside parameter for use with the MOC
footprint service.
This tuning parameter determines the resolution of the footprint
if available.
Larger values give better resolution, hence a better chance of
avoiding unnecessary queries, but processing them takes longer
and retrieving and storing them is more expensive.
<p>The value must be a power of 2,
and at the time of writing, the MOC service will not supply
footprints at resolutions greater than nside=512,
so it should be <=512.
</p>
<p>Only used if <code>usefoot=true</code>.
</p>
</dd>
<dt><strong><code>icmd = <cmds></code> <em>(<a href="http://andromeda.star.bris.ac.uk/starjavadocs/uk/ac/starlink/ttools/filter/ProcessingStep.html">ProcessingStep[]</a>)</em></strong></dt>
<dd>Specifies processing to be performed on
the input table as specified by parameter <code>in</code>,
before any other processing has taken place.
The value of this parameter is one or more of the filter
commands described in <a href="filterSteps.html">Section 6.1</a>.
If more than one is given, they must be separated by
semicolon characters (";").
This parameter can be repeated multiple times on the same
command line to build up a list of processing steps.
The sequence of commands given in this way
defines the processing pipeline which is performed on the table.
<p>Commands may alteratively be supplied in an external file,
by using the indirection character '@'.
Thus a value of "<code>@filename</code>"
causes the file <code>filename</code> to be read for a list
of filter commands to execute. The commands in the file
may be separated by newline characters and/or semicolons.
</p>
</dd>
<dt><strong><code>ifmt = <in-format></code> <em>(String)</em></strong></dt>
<dd>Specifies the format of the input table as specified by parameter <code>in</code>.
The known formats are listed in <a href="inFormats.html">Section 5.2.1</a>.
This flag can be used if you know what format your
table is in.
If it has the special value
<code>(auto)</code> (the default),
then an attempt will be
made to detect the format of the table automatically.
This cannot always be done correctly however, in which case
the program will exit with an error explaining which
formats were attempted.
<p>[Default: <code>(auto)</code>]
</p>
</dd>
<dt><strong><code>in = <table></code> <em>(<a href="http://www.starlink.ac.uk/stil/javadocs/uk/ac/starlink/table/StarTable.html">StarTable</a>)</em></strong></dt>
<dd>The location of the input table.
This may take one of the following forms:
<ul>
<li>A filename.</li>
<li>A URL.</li>
<li>The special value "<code>-</code>",
meaning standard input.
In this case the input format must be given explicitly
using the <code>ifmt</code>
parameter.
Note that not all formats can be streamed in this way.
</li>
<li>A system command line with
either a "<code><</code>" character at the start,
or a "<code>|</code>" character at the end
("<code><syscmd</code>" or
"<code>syscmd|</code>").
This executes the given pipeline and reads from its
standard output.
This will probably only work on unix-like systems.
</li>
</ul>
In any case, compressed data in one of the supported compression
formats (gzip, Unix compress or bzip2) will be decompressed
transparently.
</dd>
<dt><strong><code>istream = true|false</code> <em>(Boolean)</em></strong></dt>
<dd>If set true, the input table
specified by the <code>in</code> parameter
will be read as a stream.
It is necessary to give the
<code>ifmt</code> parameter
in this case.
Depending on the required operations and processing mode,
this may cause the read to fail (sometimes it is necessary
to read the table more than once).
It is not normally necessary to set this flag;
in most cases the data will be streamed automatically
if that is the best thing to do.
However it can sometimes result in less resource usage when
processing large files in certain formats (such as VOTable).
<p>[Default: <code>false</code>]
</p>
</dd>
<dt><strong><code>ocmd = <cmds></code> <em>(<a href="http://andromeda.star.bris.ac.uk/starjavadocs/uk/ac/starlink/ttools/filter/ProcessingStep.html">ProcessingStep[]</a>)</em></strong></dt>
<dd>Specifies processing to be performed on
the output table,
after all other processing has taken place.
The value of this parameter is one or more of the filter
commands described in <a href="filterSteps.html">Section 6.1</a>.
If more than one is given, they must be separated by
semicolon characters (";").
This parameter can be repeated multiple times on the same
command line to build up a list of processing steps.
The sequence of commands given in this way
defines the processing pipeline which is performed on the table.
<p>Commands may alteratively be supplied in an external file,
by using the indirection character '@'.
Thus a value of "<code>@filename</code>"
causes the file <code>filename</code> to be read for a list
of filter commands to execute. The commands in the file
may be separated by newline characters and/or semicolons.
</p>
</dd>
<dt><strong><code>ofmt = <out-format></code> <em>(String)</em></strong></dt>
<dd>Specifies the format in which the output table will be written
(one of the ones in <a href="outFormats.html">Section 5.2.2</a> - matching is
case-insensitive and you can use just the first few letters).
If it has the special value
"<code>(auto)</code>"
(the default),
then the output filename will be
examined to try to guess what sort of file is required
usually by looking at the extension.
If it's not obvious from the filename what output format is
intended, an error will result.
<p>This parameter must only be given if
<code>omode</code>
has its default value of "<code>out</code>".
</p>
<p>[Default: <code>(auto)</code>]
</p>
</dd>
<dt><strong><code>omode = out|meta|stats|count|cgi|discard|topcat|samp|tosql|gui</code> <em>(<a href="http://andromeda.star.bris.ac.uk/starjavadocs/uk/ac/starlink/ttools/mode/ProcessingMode.html">ProcessingMode</a>)</em></strong></dt>
<dd>The mode in which the result table will be output.
The default mode is <code>out</code>, which means that
the result will be written as a new table to disk or elsewhere,
as determined by the <code>out</code> and <code>ofmt</code>
parameters.
However, there are other possibilities, which correspond
to uses to which a table can be put other than outputting it,
such as displaying metadata, calculating statistics,
or populating a table in an SQL database.
For some values of this parameter, additional parameters
(<code><mode-args></code>)
are required to determine the exact behaviour.
<p>Possible values are
<ul>
<li><code>out</code></li>
<li><code>meta</code></li>
<li><code>stats</code></li>
<li><code>count</code></li>
<li><code>cgi</code></li>
<li><code>discard</code></li>
<li><code>topcat</code></li>
<li><code>samp</code></li>
<li><code>tosql</code></li>
<li><code>gui</code></li>
</ul>
Use the <code>help=omode</code> flag
or see <a href="outModes.html">Section 6.4</a> for more information.
</p>
<p>[Default: <code>out</code>]
</p>
</dd>
<dt><strong><code>ostream = true|false</code> <em>(Boolean)</em></strong></dt>
<dd>If set true, this will cause the operation to stream on
output, so that the output table is built up as the results
are obtained from the cone search service.
The disadvantage of this is that some output modes and formats
need multiple passes through the data to work, so depending
on the output destination, the operation may fail if this is set.
Use with care (or be prepared for the operation to fail).
<p>[Default: <code>false</code>]
</p>
</dd>
<dt><strong><code>out = <out-table></code> <em>(<a href="http://andromeda.star.bris.ac.uk/starjavadocs/uk/ac/starlink/ttools/TableConsumer.html">TableConsumer</a>)</em></strong></dt>
<dd>The location of the output table. This is usually a filename
to write to.
If it is equal to the special value "-" (the default)
the output table will be written to standard output.
<p>This parameter must only be given if
<code>omode</code>
has its default value of "<code>out</code>".
</p>
<p>[Default: <code>-</code>]
</p>
</dd>
<dt><strong><code>password = <value></code> <em>(String)</em></strong></dt>
<dd>Password for logging in to SQL database.
</dd>
<dt><strong><code>preparesql = true|false</code> <em>(Boolean)</em></strong></dt>
<dd>If true, the JDBC connection will use
<code>PreparedStatement</code>s for the SQL SELECTs
otherwise it will use simple <code>Statement</code>s.
This is a tuning parameter and affects only performance.
On some database/driver combinations it's a lot faster set
false (the default); on others it may be faster, who knows?
<p>[Default: <code>false</code>]
</p>
</dd>
<dt><strong><code>ra = <expr></code> <em>(String)</em></strong></dt>
<dd>Right ascension in degrees in the coordinate system
for the position of each row of the input table.
This may simply be a column name, or it may be an
algebraic expression calculated from columns as explained
in <a href="jel.html">Section 10</a>.
If left blank, an attempt is made to guess from UCDs,
column names and unit annotations what expression to use.
</dd>
<dt><strong><code>scorecol = <col-name></code> <em>(String)</em></strong></dt>
<dd>Gives the name of a column in the output table to contain
the distance between the requested central position and the
actual position of the returned row.
The distance returned is an angular distance in degrees.
If a null value is chosen, no distance column will appear
in the output table.
<p>[Default: <code>Separation</code>]
</p>
</dd>
<dt><strong><code>selectcols = <sql-cols></code> <em>(String)</em></strong></dt>
<dd>An SQL expression for the list of columns to be selected
from the table in the database.
A value of "<code>*</code>" retrieves all columns.
<p>[Default: <code>*</code>]
</p>
</dd>
<dt><strong><code>sr = <expr/deg></code> <em>(String)</em></strong></dt>
<dd>Expression which evaluates to the search radius in degrees
for the request at each row of the input table.
This will often be a constant numerical value, but may be
the name or ID of a column in the input table,
or a function involving one.
</dd>
<dt><strong><code>suffix0 = <label></code> <em>(String)</em></strong></dt>
<dd>If the <code>fixcols</code> parameter
is set so that input columns are renamed for insertion into
the output table, this parameter determines how the
renaming is done.
It gives a suffix which is appended to all renamed columns
from the input table.
<p>[Default: <code>_0</code>]
</p>
</dd>
<dt><strong><code>suffix1 = <label></code> <em>(String)</em></strong></dt>
<dd>If the <code>fixcols</code> parameter
is set so that input columns are renamed for insertion into
the output table, this parameter determines how the
renaming is done.
It gives a suffix which is appended to all renamed columns
from the cone result table.
<p>[Default: <code>_1</code>]
</p>
</dd>
<dt><strong><code>tiling = hpx<K>|healpixnest<K>|healpixring<K>|htm<K></code> <em>(<a href="http://andromeda.star.bris.ac.uk/starjavadocs/uk/ac/starlink/ttools/cone/SkyTiling.html">SkyTiling</a>)</em></strong></dt>
<dd>Describes the sky tiling scheme that is in use.
One of the following values may be used:
<ul>
<li><code>hpxK</code>:
alias for <code>healpixnestK</code></li>
<li><code>healpixnestK</code>:
HEALPix using the Nest scheme at order <code>K</code></li>
<li><code>healpixringK</code>:
HEALPix using the Ring scheme at order <code>K</code></li>
<li><code>htmK</code>:
Hierarchical Triangular Mesh at level <code>K</code></li>
</ul>
So for instance
<code>hpx5</code> or
<code>healpixnest5</code>
would both indicate the HEALPix NEST tiling scheme at order 5.
<p>At level K, there are 12*4^K HEALPix pixels,
or 8*4^K HTM pixels on the sky.
More information about these tiling schemes can be found at
the <a href="http://healpix.jpl.nasa.gov/">HEALPix</a>
and <a href="http://www.skyserver.org/htm/">HTM</a>
web sites.
</p>
</dd>
<dt><strong><code>usefoot = true|false</code> <em>(Boolean)</em></strong></dt>
<dd>Determines whether an attempt will be made to restrict
searches in accordance with available footprint information.
If this is set true, then before any of the per-row queries
are performed, an attempt may be made to acquire footprint
information about the servce.
If such information can be obtained, then queries which
fall outside the footprint, and hence which are known to
yield no results, are skipped. This can speed up the search
considerably.
<p>Currently, the only footprints available are those
provided by the CDS MOC (Multi-Order Coverage map) service,
which covers VizieR and a few other cone search services.
</p>
<p>[Default: <code>true</code>]
</p>
</dd>
<dt><strong><code>user = <value></code> <em>(String)</em></strong></dt>
<dd>User name for logging in to SQL database.
Defaults to the current username.
<p>[Default: <code>buildd</code>]
</p>
</dd>
<dt><strong><code>where = <sql-condition></code> <em>(String)</em></strong></dt>
<dd>An SQL expression further limiting the rows to be selected
from the database. This will be combined with the constraints
on position implied by the cone search centres and radii.
The value of this parameter should just be a condition,
it should not contain the <code>WHERE</code> keyword.
A null value indicates no additional criteria.
</dd>
</dl>
</p>
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Crossmatches table on sky position against SQL table</a><br>
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Crossmatches table on sky position against SQL table</a><br>
<hr><i>STILTS - Starlink Tables Infrastructure Library Tool Set<br>Starlink User Note256<br>STILTS web page:
<a href="http://www.starlink.ac.uk/stilts/">http://www.starlink.ac.uk/stilts/</a><br>Author email:
<a href="mailto:m.b.taylor@bristol.ac.uk">m.b.taylor@bristol.ac.uk</a><br>Mailing list:
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