About

This package is 767.6 KB. It is available at http://archive.ubuntu.com/ubuntu/pool/universe/s/staden-io-lib/staden-io-lib-examples_1.14.9-4_all.deb .

View its full control file here: debian/control.

Description

programs for maniuplating DNA sequencing files (usage examples)

Relations

This package does not depend on any other package.

This package recommends: staden-io-lib-utils.

This package does not suggest any other package.

This package does not conflict with any other package.

Package Contents

This package is indexed.

staden-io-lib-examples 1.14.9-4 is in ubuntu - bionic / universe. This package's architecture is: architectureless.

File Mime Type Owner Mode Size
/usr/ root:root 0o755
/usr/share/ root:root 0o755
/usr/share/doc/ root:root 0o755
/usr/share/doc/staden-io-lib/ root:root 0o755
/usr/share/doc/staden-io-lib-examples/ root:root 0o755
/usr/share/doc/staden-io-lib-examples/changelog.Debian.gz application/gzip root:root 0o644 939 bytes
/usr/share/doc/staden-io-lib-examples/copyright text/plain root:root 0o644 7.2 KB
/usr/share/doc/staden-io-lib/test/ root:root 0o755
/usr/share/doc/staden-io-lib/test/compare_sam.pl text/x-perl root:root 0o755 3.1 KB
/usr/share/doc/staden-io-lib/test/cram_io.test text/x-shellscript root:root 0o755 70 bytes
/usr/share/doc/staden-io-lib/test/data/ root:root 0o755
/usr/share/doc/staden-io-lib/test/data/aux#aux_java.cram application/octet-stream root:root 0o644 3.7 KB
/usr/share/doc/staden-io-lib/test/data/aux#aux_java.sam text/plain root:root 0o644 674 bytes
/usr/share/doc/staden-io-lib/test/data/aux#aux.sam text/plain root:root 0o644 727 bytes
/usr/share/doc/staden-io-lib/test/data/aux.fa text/plain root:root 0o644 29 bytes
/usr/share/doc/staden-io-lib/test/data/aux.fa.fai text/plain root:root 0o644 18 bytes
/usr/share/doc/staden-io-lib/test/data/aux#special.sam text/plain root:root 0o644 596 bytes
/usr/share/doc/staden-io-lib/test/data/aux#values1.bam application/gzip root:root 0o644 616 bytes
/usr/share/doc/staden-io-lib/test/data/aux#values2.bam application/gzip root:root 0o644 624 bytes
/usr/share/doc/staden-io-lib/test/data/aux#values4.bam application/gzip root:root 0o644 656 bytes
/usr/share/doc/staden-io-lib/test/data/both.info text/plain root:root 0o644 465 bytes
/usr/share/doc/staden-io-lib/test/data/both.run/ root:root 0o755
/usr/share/doc/staden-io-lib/test/data/both.run/4_ILLUMINA_GA_BUSTARD_PARAMS.txt.gz application/gzip root:root 0o644 955 bytes
/usr/share/doc/staden-io-lib/test/data/both.run/4_ILLUMINA_GA_CHASTITY.txt text/plain root:root 0o644 8 bytes
/usr/share/doc/staden-io-lib/test/data/both.run/4_ILLUMINA_GA_FIRECREST_PARAMS.txt.gz application/gzip root:root 0o644 1.6 KB
/usr/share/doc/staden-io-lib/test/data/both.run/4_ILLUMINA_GA_MATRIX_FWD.txt text/plain root:root 0o644 150 bytes
/usr/share/doc/staden-io-lib/test/data/both.run/4_ILLUMINA_GA_PHASING_FWD.txt text/plain root:root 0o644 93 bytes
/usr/share/doc/staden-io-lib/test/data/both.run/4_PROGRAM_ID.txt text/plain root:root 0o644 18 bytes
/usr/share/doc/staden-io-lib/test/data/both.run/s_4_0133_int.txt.gz application/gzip root:root 0o644 7.4 KB
/usr/share/doc/staden-io-lib/test/data/both.run/s_4_0133_nse.txt.gz application/gzip root:root 0o644 2.4 KB
/usr/share/doc/staden-io-lib/test/data/both.run/s_4_0133_prb.txt.gz application/gzip root:root 0o644 1.3 KB
/usr/share/doc/staden-io-lib/test/data/both.run/s_4_0133_seq.txt text/plain root:root 0o644 890 bytes
/usr/share/doc/staden-io-lib/test/data/both.run/s_4_0133_sig2.txt.gz application/gzip root:root 0o644 7.1 KB
/usr/share/doc/staden-io-lib/test/data/both.run/s_4_0134_int.txt.gz application/gzip root:root 0o644 7.3 KB
/usr/share/doc/staden-io-lib/test/data/both.run/s_4_0134_nse.txt.gz application/gzip root:root 0o644 2.5 KB
/usr/share/doc/staden-io-lib/test/data/both.run/s_4_0134_prb.txt.gz application/gzip root:root 0o644 1.0 KB
/usr/share/doc/staden-io-lib/test/data/both.run/s_4_0134_seq.txt text/plain root:root 0o644 890 bytes
/usr/share/doc/staden-io-lib/test/data/both.run/s_4_0134_sig2.txt.gz application/gzip root:root 0o644 7.0 KB
/usr/share/doc/staden-io-lib/test/data/both.srf.gz application/gzip root:root 0o644 31.7 KB
/usr/share/doc/staden-io-lib/test/data/c1#bounds.sam text/plain root:root 0o644 148 bytes
/usr/share/doc/staden-io-lib/test/data/c1#clip.sam text/plain root:root 0o644 337 bytes
/usr/share/doc/staden-io-lib/test/data/c1.fa text/plain root:root 0o644 15 bytes
/usr/share/doc/staden-io-lib/test/data/c1.fa.fai text/plain root:root 0o644 14 bytes
/usr/share/doc/staden-io-lib/test/data/c1#pad1.sam text/plain root:root 0o644 388 bytes
/usr/share/doc/staden-io-lib/test/data/c1#pad2.sam text/plain root:root 0o644 527 bytes
/usr/share/doc/staden-io-lib/test/data/c1#pad3.sam text/plain root:root 0o644 665 bytes
/usr/share/doc/staden-io-lib/test/data/ce#1.sam text/plain root:root 0o644 354 bytes
/usr/share/doc/staden-io-lib/test/data/ce#2.sam text/plain root:root 0o644 671 bytes
/usr/share/doc/staden-io-lib/test/data/ce#5b_java.cram.gz application/gzip root:root 0o644 1.8 KB
/usr/share/doc/staden-io-lib/test/data/ce#5b_java.sam text/plain root:root 0o644 1.6 KB
/usr/share/doc/staden-io-lib/test/data/ce#5b.sam text/plain root:root 0o644 1.9 KB
/usr/share/doc/staden-io-lib/test/data/ce#5.sam text/plain root:root 0o644 1.9 KB
/usr/share/doc/staden-io-lib/test/data/ce.fa.fai text/plain root:root 0o644 230 bytes
/usr/share/doc/staden-io-lib/test/data/ce.fa.gz application/gzip root:root 0o644 293.7 KB
/usr/share/doc/staden-io-lib/test/data/ce#large_seq.sam.gz application/gzip root:root 0o644 324.0 KB
/usr/share/doc/staden-io-lib/test/data/ce#tag_depadded.sam text/plain root:root 0o644 1.7 KB
/usr/share/doc/staden-io-lib/test/data/ce#tag_padded.sam text/plain root:root 0o644 1.7 KB
/usr/share/doc/staden-io-lib/test/data/ce#unmap1.sam text/plain root:root 0o644 2.8 KB
/usr/share/doc/staden-io-lib/test/data/ce#unmap2.sam.gz application/gzip root:root 0o644 1.2 KB
/usr/share/doc/staden-io-lib/test/data/ce#unmap.sam text/plain root:root 0o644 1.3 KB
/usr/share/doc/staden-io-lib/test/data/proc.info text/plain root:root 0o644 399 bytes
/usr/share/doc/staden-io-lib/test/data/proc.srf.gz application/gzip root:root 0o644 16.3 KB
/usr/share/doc/staden-io-lib/test/data/proc.srf.indexed.gz application/gzip root:root 0o644 16.4 KB
/usr/share/doc/staden-io-lib/test/data/raw.info text/plain root:root 0o644 464 bytes
/usr/share/doc/staden-io-lib/test/data/raw.srf.gz application/gzip root:root 0o644 21.2 KB
/usr/share/doc/staden-io-lib/test/data/slx-C.fasta text/plain root:root 0o644 1.7 KB
/usr/share/doc/staden-io-lib/test/data/slx-C.fastq text/plain root:root 0o644 3.1 KB
/usr/share/doc/staden-io-lib/test/data/slx.fasta text/plain root:root 0o644 1.9 KB
/usr/share/doc/staden-io-lib/test/data/slx.fastq text/plain root:root 0o644 3.4 KB
/usr/share/doc/staden-io-lib/test/data/test_run_4_134_369_182.srf.gz application/gzip root:root 0o644 3.6 KB
/usr/share/doc/staden-io-lib/test/data/traces.srf application/octet-stream root:root 0o644 28 bytes
/usr/share/doc/staden-io-lib/test/data/xx#blank.sam application/x-empty root:root 0o644 0 bytes
/usr/share/doc/staden-io-lib/test/data/xx.fa text/plain root:root 0o644 61 bytes
/usr/share/doc/staden-io-lib/test/data/xx.fa.fai text/plain root:root 0o644 29 bytes
/usr/share/doc/staden-io-lib/test/data/xx#large_aux2.sam text/plain root:root 0o644 651 bytes
/usr/share/doc/staden-io-lib/test/data/xx#large_aux_java.cram.gz application/gzip root:root 0o644 13.7 KB
/usr/share/doc/staden-io-lib/test/data/xx#large_aux_java.sam.gz application/gzip root:root 0o644 7.2 KB
/usr/share/doc/staden-io-lib/test/data/xx#large_aux.sam.gz application/gzip root:root 0o644 7.4 KB
/usr/share/doc/staden-io-lib/test/data/xx#minimal.sam text/plain root:root 0o644 254 bytes
/usr/share/doc/staden-io-lib/test/data/xx#pair.sam text/plain root:root 0o644 304 bytes
/usr/share/doc/staden-io-lib/test/data/xx#repeated.sam text/plain root:root 0o644 298 bytes
/usr/share/doc/staden-io-lib/test/data/xx#rg.sam text/plain root:root 0o644 517 bytes
/usr/share/doc/staden-io-lib/test/data/xx#triplet.sam text/plain root:root 0o644 267 bytes
/usr/share/doc/staden-io-lib/test/data/xx#unsorted.sam text/plain root:root 0o644 320 bytes
/usr/share/doc/staden-io-lib/test/generate_data.pl text/x-perl root:root 0o755 2.3 KB
/usr/share/doc/staden-io-lib/test/java.test text/x-shellscript root:root 0o755 691 bytes
/usr/share/doc/staden-io-lib/test/scram_mt.test text/x-shellscript root:root 0o755 48 bytes
/usr/share/doc/staden-io-lib/test/scram.test text/x-shellscript root:root 0o755 3.4 KB
/usr/share/doc/staden-io-lib/test/scram_v3.test text/x-shellscript root:root 0o755 56 bytes
/usr/share/doc/staden-io-lib/test/srf2fasta.test text/x-shellscript root:root 0o755 769 bytes
/usr/share/doc/staden-io-lib/test/srf2fastq.test text/x-shellscript root:root 0o755 721 bytes
/usr/share/doc/staden-io-lib/test/srf_filter.test text/x-shellscript root:root 0o755 692 bytes
/usr/share/doc/staden-io-lib/test/srf_index.test text/x-shellscript root:root 0o755 941 bytes
/usr/share/doc/staden-io-lib/test/srf_info.test text/x-shellscript root:root 0o755 464 bytes
/usr/share/lintian/ root:root 0o755
/usr/share/lintian/overrides/ root:root 0o755
/usr/share/lintian/overrides/staden-io-lib-examples text/plain root:root 0o644 138 bytes