stacks 2.0Beta8c+dfsg-1 in ubuntu - bionic / universe

About

This package is 932.4 KB. It is available at http://archive.ubuntu.com/ubuntu/pool/universe/s/stacks/stacks_2.0Beta8c+dfsg-1_amd64.deb .

View its full control file here: debian/control.

Description

pipeline for building loci from short-read DNA sequences

Relations

This package depends on: libc6 (>= 2.17), libgcc1 (>= 1:3.0), libgomp1 (>= 4.9), libhts2 (>= 1.0), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.6), python:any (>= 2.6.6-7~), samtools, libdbi-perl.

This package recommends: libspreadsheet-writeexcel-perl.

This package does not suggest any other package.

This package does not conflict with any other package.

Package Contents

This package is indexed.

stacks 2.0Beta8c+dfsg-1 is in ubuntu - bionic / universe. This package's architecture is: amd64.

File Mime Type Owner Mode Size
postinst text/x-shellscript N/A N/A 171 bytes
prerm text/x-shellscript N/A N/A 251 bytes
/usr/ root:root 0o755
/usr/bin/ root:root 0o755
/usr/bin/stacks text/x-shellscript root:root 0o755 771 bytes
/usr/lib/ root:root 0o755
/usr/lib/debian-med/ root:root 0o755
/usr/lib/debian-med/bin/ root:root 0o755
/usr/lib/debian-med/bin/clone_filter root:root 0o777
/usr/lib/debian-med/bin/count_fixed_catalog_snps.py root:root 0o777
/usr/lib/debian-med/bin/cstacks root:root 0o777
/usr/lib/debian-med/bin/denovo_map root:root 0o777
/usr/lib/debian-med/bin/denovo_map.pl root:root 0o777
/usr/lib/debian-med/bin/exec_velvet root:root 0o777
/usr/lib/debian-med/bin/exec_velvet.pl root:root 0o777
/usr/lib/debian-med/bin/export_sql root:root 0o777
/usr/lib/debian-med/bin/export_sql.pl root:root 0o777
/usr/lib/debian-med/bin/gstacks root:root 0o777
/usr/lib/debian-med/bin/index_radtags root:root 0o777
/usr/lib/debian-med/bin/index_radtags.pl root:root 0o777
/usr/lib/debian-med/bin/integrate_alignments.py root:root 0o777
/usr/lib/debian-med/bin/kmer_filter root:root 0o777
/usr/lib/debian-med/bin/load_radtags root:root 0o777
/usr/lib/debian-med/bin/load_radtags.pl root:root 0o777
/usr/lib/debian-med/bin/load_sequences root:root 0o777
/usr/lib/debian-med/bin/load_sequences.pl root:root 0o777
/usr/lib/debian-med/bin/phasedstacks root:root 0o777
/usr/lib/debian-med/bin/populations root:root 0o777
/usr/lib/debian-med/bin/process_radtags root:root 0o777
/usr/lib/debian-med/bin/process_shortreads root:root 0o777
/usr/lib/debian-med/bin/ref_map root:root 0o777
/usr/lib/debian-med/bin/ref_map.pl root:root 0o777
/usr/lib/debian-med/bin/sort_read_pairs root:root 0o777
/usr/lib/debian-med/bin/sort_read_pairs.pl root:root 0o777
/usr/lib/debian-med/bin/sstacks root:root 0o777
/usr/lib/debian-med/bin/stacks-dist-extract root:root 0o777
/usr/lib/debian-med/bin/stacks_export_notify root:root 0o777
/usr/lib/debian-med/bin/stacks_export_notify.pl root:root 0o777
/usr/lib/debian-med/bin/stacks-gdb root:root 0o777
/usr/lib/debian-med/bin/stacks-integrate-alignments root:root 0o777
/usr/lib/debian-med/bin/tsv2bam root:root 0o777
/usr/lib/debian-med/bin/ustacks root:root 0o777
/usr/lib/stacks/ root:root 0o755
/usr/lib/stacks/bin/ root:root 0o755
/usr/lib/stacks/bin/clone_filter application/x-sharedlib root:root 0o755 327.9 KB
/usr/lib/stacks/bin/count_fixed_catalog_snps.py text/plain root:root 0o755 8.4 KB
/usr/lib/stacks/bin/cstacks application/x-sharedlib root:root 0o755 407.8 KB
/usr/lib/stacks/bin/denovo_map root:root 0o777
/usr/lib/stacks/bin/denovo_map.pl text/x-perl root:root 0o755 34.4 KB
/usr/lib/stacks/bin/exec_velvet root:root 0o777
/usr/lib/stacks/bin/exec_velvet.pl text/x-perl root:root 0o755 8.7 KB
/usr/lib/stacks/bin/export_sql root:root 0o777
/usr/lib/stacks/bin/export_sql.pl text/x-perl root:root 0o755 31.1 KB
/usr/lib/stacks/bin/gstacks application/x-sharedlib root:root 0o755 679.4 KB
/usr/lib/stacks/bin/index_radtags root:root 0o777
/usr/lib/stacks/bin/index_radtags.pl text/x-perl root:root 0o755 19.9 KB
/usr/lib/stacks/bin/integrate_alignments.py text/plain root:root 0o755 10.6 KB
/usr/lib/stacks/bin/kmer_filter application/x-sharedlib root:root 0o755 259.9 KB
/usr/lib/stacks/bin/load_radtags root:root 0o777
/usr/lib/stacks/bin/load_radtags.pl text/x-perl root:root 0o755 14.7 KB
/usr/lib/stacks/bin/load_sequences root:root 0o777
/usr/lib/stacks/bin/load_sequences.pl text/x-perl root:root 0o755 6.1 KB
/usr/lib/stacks/bin/phasedstacks application/x-sharedlib root:root 0o755 379.7 KB
/usr/lib/stacks/bin/populations application/x-sharedlib root:root 0o755 786.4 KB
/usr/lib/stacks/bin/process_radtags application/x-sharedlib root:root 0o755 385.5 KB
/usr/lib/stacks/bin/process_shortreads application/x-sharedlib root:root 0o755 336.5 KB
/usr/lib/stacks/bin/ref_map root:root 0o777
/usr/lib/stacks/bin/ref_map.pl text/x-perl root:root 0o755 26.6 KB
/usr/lib/stacks/bin/sort_read_pairs root:root 0o777
/usr/lib/stacks/bin/sort_read_pairs.pl text/x-perl root:root 0o755 14.6 KB
/usr/lib/stacks/bin/sstacks application/x-sharedlib root:root 0o755 463.7 KB
/usr/lib/stacks/bin/stacks-dist-extract text/x-shellscript root:root 0o755 760 bytes
/usr/lib/stacks/bin/stacks_export_notify root:root 0o777
/usr/lib/stacks/bin/stacks_export_notify.pl text/x-perl root:root 0o755 6.3 KB
/usr/lib/stacks/bin/stacks-gdb text/x-shellscript root:root 0o755 1.2 KB
/usr/lib/stacks/bin/stacks-integrate-alignments text/x-shellscript root:root 0o755 5.6 KB
/usr/lib/stacks/bin/tsv2bam application/x-sharedlib root:root 0o755 439.2 KB
/usr/lib/stacks/bin/ustacks application/x-sharedlib root:root 0o755 412.2 KB
/usr/share/ root:root 0o755
/usr/share/doc/ root:root 0o755
/usr/share/doc/stacks/ root:root 0o755
/usr/share/doc/stacks/changelog.Debian.gz application/gzip root:root 0o644 805 bytes
/usr/share/doc/stacks/copyright text/plain root:root 0o644 1.3 KB
/usr/share/doc/stacks/README.Debian text/plain root:root 0o644 1.4 KB
/usr/share/python/ root:root 0o755
/usr/share/python/runtime.d/ root:root 0o755
/usr/share/python/runtime.d/stacks.rtupdate text/x-shellscript root:root 0o755 122 bytes

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