/usr/lib/R/site-library/gmodels/ChangeLog is in r-cran-gmodels 2.16.2-2.1.
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* [r2058] R/ci.R, man/ci.Rd: ci.binom() was using an incorrect
method for calculating binomial confidence interval. The revised
code calculates the Clopper-Pearson 'exect' interval, which is
*conservative* due to the discrete nature of the binomial
distribution.
2015-05-02 warnes
* [r2018] Rename 'trunk' to 'pkg' for compatibility with R-forge
2015-04-06 warnes
* [r1916] Add ChangeLog files to repository
2014-07-24 warnes
* [r1869] Update NEWS for gmodels 2.16.0
* [r1868] - Estimable now adds the class 'estimable' to returned
objects.
- New ci() method for estimable objects.
- Minor improvemets to man page formatting.
2013-07-18 warnes
* [r1710] Looks like Brian Ripley repackaged for R 3.0.0 and bumped
version number, so change it to 2.15.5
* [r1709] Update for gmodels 2.15.4
* [r1708] Update to current Rd syntax
* [r1707] Correct bug in estimable.mlm
2013-07-15 warnes
* [r1706] Remove unused argument to ci.mer
2012-06-28 warnes
* [r1577] Update for gmodels version 2.15.3.
* [r1576] Move percentile() function to a separate file.
* [r1575] Update est.mer() to support new S4 "mer" class.
* [r1574] Make lme4 example executable.
2012-06-27 warnes
* [r1573] Add test code submitted by Ariel.Muldoon@oregonstate.edu.
2012-04-19 warnes
* [r1528] Update for release 2.15.2
* [r1527] Update version and date.
* [r1526] The 'Design' package has been replaced my 'rms', so
update man page references.
* [r1525] More fixes for support of S4 'mer' class from lme4
package.
* [r1524] Split long line.
* [r1523] Changes to pass R CMD check
2011-12-14 warnes
* [r1521] Improve formatting of ci.mer().
* [r1520] Modify est.mer to work with recent lme4 'mer' S4 objects.
2011-01-16 warnes
* [r1466] Fix warnings reported by R CMD check. Update version
number to 2.15.1.
2009-05-09 warnes
* [r1337] Add tests for lme4 'mer' objects
* [r1336] Update for 2.15.0
* [r1335] Update description for 2.15.0
* [r1334] Add support for lme4's 'mer' objects
* [r1333] Add support for lme4's 'mer' objects
* [r1332] Fix .Rd syntax error
* [r1331] Add softlinks for ChangeLog and NEWS to top level dir for
convenience
* [r1330] Move ChangeLog and NEWS files into inst directory
* [r1329] Update Greg's email address
2008-04-10 warnes
* [r1255] Improve languages a bit
2008-01-02 warnes
* [r1236] Update Marc's email address
2007-12-12 warnes
* [r1233] Move copyright notice for Randall's contributions from
License section to Author section of the DESCRIPTION file.
2007-12-07 warnes
* [r1232] Update DESCRIPTION and NEWS for release 2.14.1
* [r1231] Correct minor typos in man page for estimable()
* [r1230] Add support for lme models to estimable()
* [r1229] Replace non-ascii characters in Soren's name with
(equivalent?) ascii character to avoid character encoding issues.
2007-10-22 warnes
* [r1196] Clarify GPL version
2007-07-26 warnes
* [r1105] Add support for mlm to estimable().
* [r1104] Add estimable method for mlm objects
2007-03-09 warnes
* [r1079] Remove stray character
* [r1078] Update NEWS file.
* [r1077] Update version number
* [r1076] Minor code formatting changes
* [r1075] Flip lower and upper interval in ci.lmer(). Add example
to man page.
* [r1074] Fix some old email addressses that got missed
2006-11-29 warnes
* [r1029] Update for 2.13.1
* [r1028] Correct declartion of S3 methods for estimable()
* [r1027] Add additional suggested packages
* [r1026] - Add generic
- Fix code vs. doc inconsistiencies
2006-11-28 warnes
* [r1025] Remove extraneous comma that causes errors in R 2.5.0
2006-11-27 warnes
* [r1016] Update for 2.13.1
* [r1015] Add missing export of methods for estimable()
2006-11-14 ggorjan
* [r1012] Removed executable property
2006-08-02 warnes
* [r977] Update my email address
2006-06-06 nj7w
* [r966] Updated ci, estimable and fit.contrast as per Randall
Johnson
2006-06-05 nj7w
* [r965] Additions as per Randall C Johnson
* [r964] Additions as per Randall C Johnson
* [r963] - New function to estimate CI's and p-values using
mcmcsamp() from the
Matrix package
2006-05-05 nj7w
* [r959] Fixed an error: According to Marc Schwartz - there was an
error when a matrix without dimnames(or names(dimnames)) was
passed as x argument
2005-12-13 nj7w
* [r808] Removed ChangeLog
* [r807] Updated NEWS
2005-12-12 nj7w
* [r796] Updated version number for CRAN
2005-12-04 warnes
* [r781] Update for 2.11.0
* [r780] Integration of code changes suggested by Randall C Johnson
to add
support for lmer (lme version 4) objects to ci(), estimable(),
and
fit.contrast().
Addition of simplified coefficient specificaiton for estimable()
based on a function provided by Randall C Johnson. It is now
possible to do things like:
estimable(reg, c("xB"=1,"xD"=-1) )
instead of:
estimable(reg, c( 0, 1, 0, -1) )
which should make estimable much easier to use for large models.
2005-12-01 nj7w
* [r776] Updated Greg's email address
2005-10-27 warnes
* [r709] Update version number. Bump minor version since we added
functionality.
* [r708] Add ci.binom() to NAMESPACE, bump version
2005-10-26 warnes
* [r707] Add ci.binom
2005-10-25 warnes
* [r706] Add gdata::nobs to import list. Needed by ci()
2005-09-12 nj7w
* [r671] Updated Greg's email
2005-09-07 nj7w
* [r667] Fixed man page
2005-09-06 nj7w
* [r664] Updated DESCRIPTION
* [r663] Added NEWS
* [r662] Fixed the Package name
2005-09-02 nj7w
* [r655] Added ChangeLog
2005-08-31 nj7w
* [r644] Added DESCRIPTION file
* [r643] removed DESCRIPTION.in
2005-07-11 nj7w
* [r627] Revision based on Marc Schwartz's suggestions:
1) Added 'dnn' argument to enable specification of dimnames as
per table()
2) Corrected bug in SPSS output for 1d table, where proportions
were being printed and not percentages ('%' output)
2005-06-09 nj7w
* [r625] Updating the version number, and various help files to
synchronize splitting of gregmisc bundle in 4 individual
components.
* [r623] Updates by Marc Schwartz:
CrossTable:
# Revision 2.0 2005/04/27
# Added 'format = "d"' to all table count output
# so that large integers do not print in
# scientific notation
2005-05-13 nj7w
* [r621] 1) Using dQuote.ascii function in read.xls as the new
version of dQuote doesn't work proprly with UTF-8 locale.
2) Modified CrossTable.Rd usage in gmodels
3) Modified heatmap.2 usage in gplots.
2005-05-11 warnes
* [r620] Add dependency on gdata::frameApply.
2005-03-31 warnes
* [r593] Add ceofFrame function to NAMESPACE
* [r592] coefFrame example needs to properly load ELISA data from
gtools package
* [r588] Ensure that each file has $Id$ header, and no $Log$
* [r587] Add coefFrame() function contributed by Jim Rogers
2005-01-18 warnes
* [r521] Removed Windows Line Endings
2005-01-14 nj7w
* [r518] Updated the manual to reflect prop.chisq change in its R
file.
2005-01-14 warnes
* [r517] Nitin added display of the Chisquare contribution of each
cell, as suggested
by Greg Snow.
2005-01-12 warnes
* [r515] Add dependency on R 1.9.0+ to prevent poeple from
installing on old
versions of R which don't support namespaces.
2004-12-23 nj7w
* [r507] Split the function print.CrossTable.vector in two parts -
for SAS behaiour and SPSS behaviour. Also put the code of
printing statistics in a function 'print.statistics'
2004-12-21 warnes
* [r502] Added & extended changes made by Nitin to implement 'SPSS'
format, as suggested by
Dirk Enzmann <dirk.enzmann@jura.uni-hamburg.de>.
2004-09-30 warneg
* [r464] Fix typos.
2004-09-27 warneg
* [r461] Updated to pass R CMD check.
2004-09-03 warneg
* [r450] Add explicit package to call to quantcut in example.
* [r446] initial bundle checkin
2004-09-02 warneg
* [r442] Initial revision
2004-05-25 warnes
* [r327] Updates from Mark Schwartz.
2004-04-13 warnes
* [r314] Fix latex warning: it doesn't like double subscripts.
2004-03-26 warnes
* [r306] Reflect movement of code from 'mva' package to 'stats' in
R 1.9.0.
2004-03-25 warnes
* [r296] - Estimable was reporting sqrt(X^2) rather than X^2 in the
output.
- Provide latex math markup for linear algebra expressions in
help text.
- Other clarifications in help text
* [r295] Add enhancements to estimable() provided by S�ren
H�jsgaard
\email{sorenh@agrsci.dk}:
I have made a modified version of the function [..] which
1) also works on geese and gee objects and
2) can test hypotheses af the forb L * beta = beta0 both as a
single Wald test and row-wise for each row in L.
2003-11-17 warnes
* [r221] - Fix incorrect handling of glm objects by fit.contrast,
as reported
by Ulrich Halekoh, Phd <ulrich.halekoh@agrsci.dk>.
- Add regression test code to for this bug.
2003-08-07 warnes
* [r217] - Fixed incorrect denominator in standard error for mean
in ci.default.
2003-04-22 warnes
* [r190] - the variable 'df' was used within the lme code section
overwriting
the argument 'df'.
2003-03-12 warnes
* [r173] - Fixed a typo in the example
- Added to lme example
2003-03-07 warnes
* [r168] - Minor changes to code to allow the package to be
provided as an
S-Plus chapter.
2003-01-30 warnes
* [r160] - Renamed 'contrast.lm' to 'fit.contrast'. This new name
is more
descriptive and makes it easier to create and use methods for
other
classes, eg lme.
- Enabled fit.contrast for lme object now that Doug Bates has
provided
the necessary support for contrasts in the nlme package.
- New contrast.lm function which generates a 'depreciated'
warning and
calls fit.contrast
- Updated help text to match changes.
* [r158] - Removed argument 'correct' and now print separate
corrected values
for 2 x 2 tables.
- Added arguments 'prop.r', 'prop.c' and 'prop.t' to toggle
printing
of row, col and table percentages. Default is TRUE.
- Added argument 'fisher' to toggle fisher exact test. Default is
FALSE.
- Added McNemar test to statistics and argument 'mcnemar' to
toggle
test. Default is FALSE.
- Added code to generate an invisible return list containing
table
counts, proportions and the results of the appropriate
statistical tests.
* [r157] - Added explicit check to ensure that the number of
specified
contrasts is less than or equal to the ncol - 1. Previously, this
failed with an obtuse error message when the contrast matrix had
row
names, and silently dropped contrasts over ncol-1.
2002-11-04 warnes
* [r142] - Moved fisher.test() to after table is printed, so that
table is
still printed in the event that fisher.test() results in errors.
2002-10-29 warnes
* [r138] - Fixes to fast.svd to make it actually work.
- Updates to man page to fix mistmatches between code and docs
and to
fix warnings.
* [r137] - Moved make.contrasts to a separate file.
- Enhanced make contrasts to better label contrast matrix, to
give
how.many a default value, and to coerce vectors into row
matrixes.
- Added help page for make.contrasts.
- Added link from contrasts.lm seealso to make.contrasts.
* [r136] Initial checkin for fast.prcomp() and fast.svd().
2002-09-26 warnes
* [r127] - Added note and example code to illustrate how to
properly compute
contrasts for the first factor in the model.
2002-09-24 warnes
* [r124] - Fixed a typo.
2002-09-23 warnes
* [r119] - Fixed syntax errors in barplot2.Rd and CrossTable.Rd
- Fixed incorrect translation of 'F' (distribution) to 'FALSE' in
glh.test.Rd
* [r117] - Modified all files to include CVS Id and Log tags.
* [r116] - Added CrossTable() and barplot2() code and docs
contributed by Marc Schwartz.
- Permit combinations() to be used when r>n provided
repeat.allowed=TRUE
- Bumped up version number
2002-08-01 warnes
* [r114] - Corrected documentation mismatch for ci, ci.default.
- Replaced all occurences of '_' for assignment with '<-'.
- Replaced all occurences of 'T' or 'F' for 'TRUE' and 'FALSE'
with
the spelled out version.
- Updaded version number and date.
2002-04-09 warneg
* [r109] Checkin for version 0.5.3
2002-03-26 warneg
* [r104] - Changed methods to include '...' to match the generic.
- Updated for version 0.5.1
* [r99] Removed incorrect link to 'contrast' from seealso.
2002-02-20 warneg
* [r81] Minor changes, typo and formatting fixes.
2002-01-17 warneg
* [r70] - Fixed errror in last example by adding 'conf.int'
parameter to
'estimable' call.
* [r69] - Fixed typo in code that resulted in an syntax error.
2002-01-10 warneg
* [r68] - print.glh.test() was using cat() to printing the call.
This didn't work and
generated an error.
2001-12-19 warneg
* [r66] - Fixed display of formulae.
- Added description of return value
* [r65] - Removed extra element of return object.
2001-12-18 warneg
* [r64] - Updated documentation to reflect change of parameters
from 'alpha'
to 'conf.int', including the new optional status of the
confidence
intervals.
* [r63] - Modified to make confidence intervals optional. Changed
'alpha'
parameter giving significance level to 'conf.int' giving
confidence
level.
* [r62] - Added summary.glh.test to alias, usage, and example
sections.
* [r61] - Modified to work correctly when obj is of class 'aov' by
specifying
summary.lm instead of summary. This ensures that the summary
object
has the fields we need.
- Moved detailed reporting of results from 'print' to 'summary'
function and added a simpler report to 'print'
* [r60] - Modified to work correctly when obj is of class 'aov' by
specifying
summary.lm instead of summary. This ensures that the summary
object
has the fields we need.
* [r59] Initial checkin.
2001-12-17 warneg
* [r56] - Fixed spelling errors.
* [r55] - Fixed the link to contrasts.lm.
- Rephrased title/description to be more clear.
2001-12-10 warneg
* [r49] Renamed 'contrsts.coeff.Rd' to 'estimable.Rd' corresponding
to function rename.
* [r48] renamed from contrast.coeff.R to estimable.R (incorrectly
via contrast.lm.R)
2001-12-07 warneg
* [r37] - Added text noting that lme is now supported.
* [r36] - Fixed typo: DF column was being filled in with p-value.
* [r35] - Added ci.lme method to handle lme objects.
2001-10-16 warneg
* [r27] Fixed unbalanced brace.
2001-08-25 warneg
* [r12] - Added CVS header.
- Added my email address.
2001-05-30 warneg
* [r2] Initial revision
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