/usr/lib/R/site-library/biomaRt/NAMESPACE is in r-bioc-biomart 2.34.1-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 | import(methods)
import(RCurl,XML)
importFrom(utils, edit, head, read.table)
importFrom(AnnotationDbi, keys, columns, keytypes, select)
importFrom(progress, progress_bar)
importFrom(stringr, str_extract_all, str_match)
importFrom(httr, POST, content)
#for some reason RCurl needs to have findHTTPHeaderEncoding exported -
#remove it from the exports if this ever gets fixed
export(listMarts, getGene, getSequence, exportFASTA, useMart, listDatasets,
useDataset, listEnsembl, useEnsembl, listAttributes, listFilters,
getBM, getXML,getLDS, attributePages, filterOptions,filterType,
getBMlist, NP2009code, keys, columns, keytypes, select,
listEnsemblArchives)
exportClasses(Mart)
exportMethods("show")
|