This file is indexed.

/usr/lib/R/site-library/biomaRt/INDEX is in r-bioc-biomart 2.34.1-1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
Mart-class              Class Mart
NP2009code              Display the analysis code from the 2009 Nature
                        protocols paper
attributePages          Gives a summary of the attribute pages
exportFASTA             Exports getSequence results to FASTA format
filterOptions           Displays the filter options
filterType              Displays the filter type
getBM                   Retrieves information from the BioMart database
getBMlist               Retrieves information from the BioMart database
getGene                 Retrieves gene annotation information given a
                        vector of identifiers
getLDS                  Retrieves information from two linked datasets
getSequence             Retrieves sequences
getXML                  Retrieves information from the BioMart database
                        using an XML query
listAttributes          lists the attributes available in the selected
                        dataset
listDatasets            lists the datasets available in the selected
                        BioMart database
listEnsembl             lists the available BioMart databases hosted by
                        Ensembl
listEnsemblArchives     Lists the available archived versions of
                        Ensembl
listFilters             lists the filters available in the selected
                        dataset
listMarts               lists the available BioMart databases
select-methods          Retrieve information from the BioMart databases
useDataset              Select a dataset to use and updates Mart object
useEnsembl              Connects to the selected BioMart database and
                        dataset hosted by Ensembl
useMart                 Connects to the selected BioMart database and
                        dataset