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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 | # About
Microservice to manage biomaj, acts as a frontend to receive biomaj-cli commands and execute operations
Needs mongo and redis
# Development
flake8 --ignore E501 biomaj_daemon
# Run
## Message consumer:
export BIOMAJ_CONFIG=path_to_config.yml
python bin/biomaj_daemon_consumer.py
## Web server
If package is installed via pip, you need a file named *gunicorn_conf.py* containing somehwhere on local server:
def worker_exit(server, worker):
from prometheus_client import multiprocess
multiprocess.mark_process_dead(worker.pid)
If you cloned the repository and installed it via python setup.py install, just refer to the *gunicorn_conf.py* in the cloned repository.
export BIOMAJ_CONFIG=path_to_config.yml
rm -rf ..path_to/prometheus-multiproc
mkdir -p ..path_to/prometheus-multiproc
export prometheus_multiproc_dir=..path_to/prometheus-multiproc
gunicorn -c ../path_to/gunicorn_conf.py biomaj_daemon.daemon.biomaj_daemon_web:app
Web processes should be behind a proxy/load balancer, API base url /api/daemon
## API
For authentication, add api key to HTTP header X-API-KEY
For admin only, operations, add to config.yml
general:
admin:
- admin_user_id
TO use API, some operations are limited to
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