/usr/include/gamera/plugins/features.hpp is in python-gamera-dev 1:3.4.2+git20160808.1725654-2.
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*
* Copyright (C) 2001-2005 Ichiro Fujinaga, Michael Droettboom, Karl MacMillan
* 2009-2012 Christoph Dalitz
* 2010 Robert Butz
* 2012 Andrew Hankinson
*
* This program is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program; if not, write to the Free Software
* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
*/
#ifndef kwm10242002_features
#define kwm10242002_features
#include "gamera.hpp"
#include "image_utilities.hpp"
#include "morphology.hpp"
#include "thinning.hpp"
#include "plugins/projections.hpp"
#include "plugins/transformation.hpp"
#include <cmath>
#include <vector>
namespace Gamera {
//
// Black Area
//
// Find the number of black pixels in an image. This is just a convenience
// routine, but it demonstrates the correct method for determining whether
// a pixel is black or white.
//
template<class T>
void black_area(const T& mat, feature_t* buf) {
*buf = 0;
for (typename T::const_vec_iterator i = mat.vec_begin();
i != mat.vec_end(); ++i) {
if (is_black(*i))
(*buf)++;
}
}
// Old-style version, since it is called from C++ elsewhere
template<class T>
feature_t black_area(const T& mat) {
int black_pixels = 0;
for (typename T::const_vec_iterator i = mat.vec_begin();
i != mat.vec_end(); ++i) {
if (is_black(*i))
black_pixels++;
}
return (feature_t)black_pixels;
}
// Ratio of black to white pixels
template<class T>
feature_t volume(const T &m) {
unsigned int count = 0;
typename T::const_vec_iterator i = m.vec_begin();
for (; i != m.vec_end(); i++)
if (is_black(*i))
count++;
return (feature_t(count) / (m.nrows() * m.ncols()));
}
template<class T>
void volume(const T &m, feature_t* buf) {
*buf = volume(m);
}
//
// Normalized Central Moments
//
// Returns vector containing:
// u10, u01, u20, u02, u11, u30, u12, u21, u03
//
template<class Iterator>
void moments_1d(Iterator begin, Iterator end, feature_t& m0, feature_t& m1,
feature_t& m2, feature_t& m3) {
// zeroeth, first, second, third order on one axis
feature_t tmp = 0;
size_t x = 0;
Iterator itx = begin;
for (; itx != end; ++itx, x++) {
size_t y = 0, proj = 0;
typename Iterator::iterator ity = itx.begin();
for (; ity != itx.end(); ++ity, ++y)
if (is_black(*ity))
proj++;
m0 += proj;
m1 += (tmp = x * proj);
m2 += (tmp *= x);
m3 += (tmp * x);
}
}
template<class Iterator>
void moments_2d(Iterator begin, Iterator end, feature_t& m11, feature_t& m12,
feature_t& m21) {
feature_t tmp = 0;
size_t x = 0;
Iterator itx = begin;
for (; itx != end; itx++, x++) {
size_t y = 0;
typename Iterator::iterator ity = itx.begin();
for (; ity != itx.end(); ity++, y++)
if (is_black(*ity)) {
m11 += (tmp = x * y);
m21 += (tmp * x);
m12 += (tmp * y);
}
}
}
template<class T>
void moments(T &m, feature_t* buf) {
feature_t m10 = 0, m11 = 0, m20 = 0, m21 = 0, m12 = 0,
m01 = 0, m02 = 0, m30 = 0, m03 = 0, m00 = 0, dummy = 0;
moments_1d(m.row_begin(), m.row_end(), m00, m01, m02, m03);
moments_1d(m.col_begin(), m.col_end(), dummy, m10, m20, m30);
moments_2d(m.col_begin(), m.col_end(), m11, m12, m21);
if (m00 == 0.0) m00 = 1.0; // special case: no black pixels
feature_t x, y, x2, y2, div;
x = (feature_t)m10 / m00;
x2 = 2 * x * x;
y = (feature_t)m01 / m00;
y2 = 2 * y * y;
// normalized center of gravity [0,1]
if (m.ncols() > 1)
*(buf++) = x / (m.ncols()-1);
else
*(buf++) = 0.5; // only one pixel wide
if (m.nrows() > 1)
*(buf++) = y / (m.nrows()-1);
else
*(buf++) = 0.5; // only one pixel high
div = (feature_t)m00 * m00; // common normalization divisor
*(buf++) = (m20 - (x * m10)) / div; // u20
*(buf++) = (m02 - (y * m01)) / div; // u02
*(buf++) = (m11 - (y * m10)) / div; // u11
div *= (feature_t)sqrt((double)m00);
*(buf++) = (m30 - (3 * x * m20) + (x2 * m10)) / div; // u30
*(buf++) = (m12 - (2 * y * m11) - (x * m02) + (y2 * m10)) / div; // u12
*(buf++) = (m21 - (2 * x * m11) - (y * m20) + (x2 * m01)) / div; // u21
*buf = (m03 - (3 * y * m02) + (y2 * m01)) / div; // u03
}
// Number of holes in x and y direction
// Counts the number of black runs (runs that "wrap-around" considered
// two runs).
// This is the Euler number
// See:
// Di Zenzo, S.; Cinque, L.; Levialdi, S.
// Run-based algorithms for binary image processing
// Pattern Analysis and Machine Intelligence, IEEE Transactions on ,
// Volume: 18 Issue: 1 , Jan. 1996
// Page(s): 83 -89
template<class Iterator>
inline int nholes_1d(Iterator begin, Iterator end) {
int hole_count = 0;
bool last;
bool has_black;
Iterator r = begin;
for (; r != end; r++) {
last = false;
has_black = false;
typename Iterator::iterator c = r.begin();
for (; c != r.end(); c++) {
if (is_black(*c)){
last = true;
has_black = true;
}
else if (last) {
last = false;
hole_count++;
}
}
if (!last && hole_count && has_black){
hole_count--;
}
}
return hole_count;
}
template<class T>
void nholes(T &m, feature_t* buf) {
int vert, horiz;
vert = nholes_1d(m.col_begin(), m.col_end());
horiz = nholes_1d(m.row_begin(), m.row_end());
*(buf++) = (feature_t)vert / m.ncols();
*buf = (feature_t)horiz / m.nrows();
}
//
// nholes_extended
//
// This divides the image into strips (both horizontally
// and vertically) and computes the number of holes on each strip.
//
template<class T>
void nholes_extended(const T& m, feature_t* buf) {
double quarter_cols = m.ncols() / 4.0;
double start = 0.0;
for (size_t i = 0; i < 4; ++i) {
*(buf++) = nholes_1d(m.col_begin() + size_t(start),
m.col_begin() + size_t(start) + size_t(quarter_cols))
/quarter_cols;
start += quarter_cols;
}
double quarter_rows = m.nrows() / 4.0;
start = 0.0;
for (size_t i = 0; i < 4; ++i) {
*(buf++) = nholes_1d(m.row_begin() + size_t(start),
m.row_begin() + size_t(start) + size_t(quarter_rows))
/ quarter_rows;
start += quarter_rows;
}
}
template<class T>
void area(const T& image, feature_t* buf) {
*buf = feature_t(image.nrows() * image.ncols()) / image.scaling();
}
template<class T>
void aspect_ratio(const T& image, feature_t* buf) {
*buf = feature_t(image.ncols()) / feature_t(image.nrows());
}
template<class T>
void nrows_feature(const T& image, feature_t* buf) {
*buf = feature_t(image.nrows());
}
template<class T>
void ncols_feature(const T& image, feature_t* buf) {
*buf = feature_t(image.ncols());
}
// helper function for compactness which computes the surface
// of pixels lying on the image bounding box that are ignored
// by a dilation
template<class T>
feature_t compactness_border_outer_volume(const T &m) {
int lastPx = 0;
int i, rows, cols;
int startPx = 0;
feature_t num_dil_px = 0;
rows = m.nrows();
cols = m.ncols();
startPx = m.get(Point(0,0)); // needed for the last pxs
// 1st row left to right, including both corners
for (i=0; i<cols; i++) {
if (is_black(m.get(Point(i,0)))) {
if (lastPx == 2) num_dil_px += 1;
else if (lastPx == 1) num_dil_px += 2;
else num_dil_px += 3;
if (i == 0 || i== rows-1) // upper left or upper right corner
num_dil_px += 2;
lastPx = 2;
} else { // px is white
lastPx -=1;
if (i== rows-1) // upper right corner
lastPx = 0;
}
}
// last column top-> down, including lower right corner
for (i=1; i<rows; i++) {
if (is_black( m.get(Point(cols-1,i)))) {
if (lastPx == 2) num_dil_px += 1;
else if (lastPx == 1) num_dil_px += 2;
else num_dil_px += 3;
if (i== rows-1)// lower right corner
num_dil_px += 2;
lastPx = 2;
} else { // px is white
lastPx -=1;
if (i== rows-1)// lower right corner
lastPx = 0;
}
}
// last row right to left, including lower left corner
for (i=cols-2; i>=0; i--) {
if (is_black(m.get(Point(i,rows-1)))) {
if (lastPx == 2) num_dil_px += 1;
else if (lastPx == 1) num_dil_px += 2;
else num_dil_px += 3;
if (i== 0)// lower left corner
num_dil_px += 2;
lastPx = 2;
}
else{ // px is white
lastPx -=1;
if (i== 0) // lower left corner
lastPx = 0;
}
}
// 1st column down->top, no corners included
for (i=rows-2; i>0; i--) {
if (is_black(m.get(Point(0,i)))) {
if (lastPx == 2) num_dil_px += 1;
else if (lastPx == 1) num_dil_px += 2;
else num_dil_px += 3;
lastPx = 2;
} else { // px is white
lastPx -=1;
}
}
// avoiding overlapping dilated_px: Start-End
if (is_black(startPx)) {
if (is_black(m.get(Point(0,1)))) {
num_dil_px -= 2;
}
else if (is_black( m.get(Point(0,2)))) {
num_dil_px -= 1;
}
}
return num_dil_px / (rows*cols); // volume
}
//
// compactness
//
// compactness is ratio of the volume of the outline of an image to
// the volume of the image.
//
template<class T>
void compactness(const T& image, feature_t* buf) {
// I've converted this to a more efficient method. Rather than
// using (volume(outline) / volume(original)), I just use
// volume(dilated) - volume(original) / volume(original). This
// prevents the unnecessary xor_image pixel-by-pixel operation from
// happening. We still need to create a copy to dilate, however,
// since we don't want to change the original.
// as dilate does not extend beyond the image borders,
// we must compute the surface of the border pixels separately
feature_t vol = volume(image);
feature_t outer_vol = compactness_border_outer_volume(image);
feature_t result;
if (vol == 0)
result = std::numeric_limits<feature_t>::max();
else {
typedef typename ImageFactory<T>::view_type* view_type;
view_type copy = erode_dilate(image, 1, 0, 0);
// dilate(*copy);
result = (volume(*copy) + outer_vol - vol) / vol;
delete copy->data();
delete copy;
}
*buf = result;
}
//
// volume16regions
//
// This function divides the image into 16 regions and takes the volume of
// each of those regions.
//
template<class T>
void volume16regions(const T& image, feature_t* buf) {
double rows = image.nrows() / 4.0;
double cols = image.ncols() / 4.0;
size_t rows_int = size_t(rows);
size_t cols_int = size_t(cols);
Dim size(cols_int, rows_int);
if (size.ncols() == 0)
size.ncols(1);
if (size.nrows() == 0)
size.nrows(1);
double start_col = double(image.offset_x());
for (size_t i = 0; i < 4; ++i) {
double start_row = double(image.offset_y());
for (size_t j = 0; j < 4; ++j) {
T tmp(image, Point((size_t)start_col, (size_t)start_row), size);
*(buf++) = volume(tmp);
start_row += rows;
size.nrows( size_t(start_row + rows)-size_t(start_row));
if (size.nrows() == 0)
size.nrows(1);
}
start_col += cols;
size.ncols( size_t(start_col + cols) - size_t(start_col));
if (size.ncols() == 0)
size.ncols(1);
}
}
//
// volume64regions
//
// This function divides the image into 64 regions and takes the volume of
// each of those regions.
//
template<class T>
void volume64regions(const T& image, feature_t* buf) {
double rows = image.nrows() / 8.0;
double cols = image.ncols() / 8.0;
size_t rows_int = size_t(rows);
size_t cols_int = size_t(cols);
Dim size(cols_int, rows_int);
if (size.ncols() == 0)
size.ncols(1);
if (size.nrows() == 0)
size.nrows(1);
double start_col = double(image.offset_x());
for (size_t i = 0; i < 8; ++i) {
double start_row = double(image.offset_y());
for (size_t j = 0; j < 8; ++j) {
T tmp(image, Point((size_t)start_col, (size_t)start_row), size);
*(buf++) = volume(tmp);
start_row += rows;
size.nrows( size_t(start_row + rows)-size_t(start_row));
if (size.nrows() == 0)
size.nrows(1);
}
start_col += cols;
size.ncols( size_t(start_col + cols) - size_t(start_col));
if (size.ncols() == 0)
size.ncols(1);
}
}
//
// Zernike Moments
//
inline double zer_pol_R(int n, int m, double x, double y) {
// precomputed factorials => make sure that n < 11
static const long int fak_a[] = {1, 1, 2, 2*3, 2*3*4, 2*3*4*5, 2*3*4*5*6, 2*3*4*5*6*7, 2*3*4*5*6*7*8, 2*3*4*5*6*7*8*9, 2*3*4*5*6*7*8*9*10, 2*3*4*5*6*7*8*9*10*11,
(long int)2*3*4*5*6*7*8*9*10*11*12, (long int)2*3*4*5*6*7*8*9*10*11*12*13, (long int)2*3*4*5*6*7*8*9*10*11*12*13*14, (long int)2*3*4*5*6*7*8*9*10*11*12*13*14*15};
long int s,Na,Nb,Nc;
int sign = 1;
double result = 0;
double distance = sqrt(x * x + y * y);
double d_pow_n = pow(distance, n);
double d_pow_2s = 1;
double Zb = d_pow_n;
for(s=0; s<=(n-m)/2; s++)
{
Na = fak_a[n-s] / fak_a[s];
Nb = fak_a[(n+m)/2-s];
Nc = fak_a[(n-m)/2-s];
result += (sign * Na * Zb) / (Nb * Nc);
sign = -sign;
// Replaced:
// Zb = pow(distance,n-2*s);
// by:
d_pow_2s *= distance * distance;
Zb = d_pow_n / d_pow_2s;
}
return result;
}
inline void zer_pol(int n, int m, double x, double y, double& real, double& imag, double norm_scale=1.0) {
const complex<double> I(0.0, 1.0);
// theoretically redundant due to scaling,
// but with translation-normalizing after all needed
if (sqrt(x*x + y*y) > 1.0) {
real = 0.0;
imag = 0.0;
} else {
double Rnm = zer_pol_R(n, m, x*norm_scale, y*norm_scale);
double angle_Theta = atan2(y,x);
complex<double> Inm = exp(m*angle_Theta*I);
complex<double> result = conj(Rnm * Inm); // complex conj.
real = result.real();
imag = result.imag();
}
}
// we use this wrapper so that it is easy to
// change the maximum order in the future
template<class T>
void zernike_moments(const T& image, feature_t* buf) {
// beware that, when changing the maximum order from six to
// something different, the dimension of the feature vector
// needs to be adjusted in the python interface features.py
zernike_moments( image, buf, 6);
}
template<class T>
void zernike_moments(const T& image, feature_t* buf, size_t order_n) {
size_t const max_order_n=order_n;
size_t num_features=0; // evaluated by max_order_n
double x_dist, y_dist, real_tmp, imag_tmp;
// number of features depends on maximum order
for (size_t i=0 ; i<=max_order_n; i++)
num_features += i/2 + 1;
num_features -= 2; // A00 and A11 are constants
size_t m, n, idx;
double* tmp_real = new double[num_features];
double* tmp_imag = new double[num_features];
memset(tmp_real, 0, num_features * sizeof(double));
memset(tmp_imag, 0, num_features * sizeof(double));
feature_t* begin = buf;
for (size_t i = 0; i < num_features; ++i)
*(buf++) = 0.0;
buf = begin;
const T* scaled_image = ℑ // we do not scale
//compute center of mass and normalization factor m00
feature_t m00=0, m10=0, m01=0, dummy1=0, dummy2=0, dummy3=0;
moments_1d(scaled_image->row_begin(), scaled_image->row_end(), m00, m01, dummy1, dummy2);
moments_1d(scaled_image->col_begin(), scaled_image->col_end(), dummy1, m10, dummy2, dummy3);
double centroid_x = m10/m00;
double centroid_y = m01/m00;
// we use a Zernike circle that includes the entire image
// beware however that some pixels can fall outside the circle
// by normalizing ZMs to be translation invariant, e.g. a large
// bunch of pixels in the upper left corner which draws the
// center to it, excludes pixels in the lower right corner.
double unit_circle_scale = 0;
for(size_t y = 0; y < scaled_image->nrows(); ++y) {
for (size_t x = 0; x < scaled_image->ncols(); ++x) {
if (is_black(scaled_image->get(Point(x,y)))) {
double scale_tmp = (centroid_x - (double)x)*(centroid_x - (double)x) + (centroid_y - (double)y)*(centroid_y - (double)y);
if(scale_tmp > unit_circle_scale)
unit_circle_scale = scale_tmp;
}
}
}
// Make sure that the farthest pixel is within our analysis circle
unit_circle_scale = 1.01 * sqrt(unit_circle_scale);
if (unit_circle_scale < 0.00001) unit_circle_scale = 1.0;
typename T::const_vec_iterator it = scaled_image->vec_begin();
for (size_t y = 0; y < scaled_image->nrows(); ++y) {
for (size_t x = 0; x < scaled_image->ncols(); ++x, ++it) {
if (is_black(*it)) {
x_dist = (x - centroid_x) / unit_circle_scale;
y_dist = (y - centroid_y) / unit_circle_scale;
if (abs(x_dist) > 0.00001 || abs(y_dist) > 0.00001) {
for (n = 2, idx=0; n <= max_order_n; ++n) {
for (m = n%2; m <= n; m+=2) {
zer_pol(n, m, x_dist, y_dist, real_tmp, imag_tmp);
tmp_real[idx] += real_tmp;
tmp_imag[idx++] += imag_tmp;
}
}
}
}
}
}
for(idx = 0; idx<num_features; idx++)
buf[idx] = sqrt(tmp_real[idx]*tmp_real[idx] + tmp_imag[idx]*tmp_imag[idx]);
// scale normalization by m00
for (size_t n = 2, idx=0; n <= max_order_n; ++n) {
double multiplier = (n + 1) / M_PI;
if (m00 != 0.0)
multiplier /= m00;
for (m= n%2; m<= n; m+=2)
buf[idx++] *= multiplier;
}
delete [] tmp_real;
delete [] tmp_imag;
}
//
// Skeleton features
//
template<class T>
void skeleton_features(const T& image, feature_t* buf) {
if (image.nrows() == 1 || image.ncols() == 1) {
*(buf++) = 0.0;
*(buf++) = 0.0;
*(buf++) = 0.0;
*(buf++) = 3.0;
*(buf++) = 3.0;
*buf = 3.0;
return;
}
typedef typename ImageFactory<T>::view_type* view_type;
view_type skel = thin_lc(image);
unsigned char p;
size_t T_joints = 0, X_joints = 0, bend_points = 0;
size_t end_points = 0, total_pixels = 0;
size_t center_x = 0, center_y = 0;
for (size_t y = 0; y < skel->nrows(); ++y) {
size_t y_before = (y == 0) ? 1 : y - 1;
size_t y_after = (y == skel->nrows() - 1) ? skel->nrows() - 2 : y + 1;
for (size_t x = 0; x < skel->ncols(); ++x) {
if (is_black(skel->get(Point(x, y)))) {
++total_pixels;
center_x += x;
center_y += y;
size_t N, S;
thin_zs_get(y, y_before, y_after, x, *skel, p, N, S);
switch (N) {
case 4:
++X_joints;
break;
case 3:
++T_joints;
break;
case 2:
if (!(((p & 17) == 17) || // Crosswise pairs
((p & 34) == 34) ||
((p & 68) == 68) ||
((p & 136) == 136)))
++bend_points;
break;
case 1:
++end_points;
break;
}
}
}
}
if (total_pixels == 0) {
for (size_t i = 0; i < 6; ++i)
*(buf++) = 0.0;
return;
}
center_x /= total_pixels;
size_t x_axis_crossings = 0;
bool last_pixel = false;
for (size_t y = 0; y < skel->nrows(); ++y)
if (is_black(skel->get(Point(center_x, y))) && !last_pixel) {
last_pixel = true;
++x_axis_crossings;
} else {
last_pixel = false;
}
center_y /= total_pixels;
size_t y_axis_crossings = 0;
last_pixel = false;
for (size_t x = 0; x < skel->ncols(); ++x) {
if (is_black(skel->get(Point(x, center_y))) && !last_pixel) {
last_pixel = true;
++y_axis_crossings;
} else {
last_pixel = false;
}
}
delete skel->data();
delete skel;
*(buf++) = feature_t(X_joints);
*(buf++) = feature_t(T_joints);
*(buf++) = feature_t(bend_points) / feature_t(total_pixels);
*(buf++) = feature_t(end_points);
*(buf++) = feature_t(x_axis_crossings);
*buf = feature_t(y_axis_crossings);
}
//
// Top Bottom
//
template<class T>
void top_bottom(const T& m, feature_t* buf) {
int top = -1;
typename T::const_row_iterator ri = m.row_begin();
for (int i = 0; ri != m.row_end(); ri++, i++) {
typename T::const_col_iterator ci = ri.begin();
for (; ci != ri.end(); ci++)
if (is_black(*ci)) {
top = i;
break;
}
if (top != -1)
break;
}
if (top == -1) {
*(buf++) = 1.0;
*buf = 0.0;
return;
}
int bottom = -1;
ri = m.row_end();
--ri;
for (int i = m.nrows() - 1; ri != m.row_begin(); ri--, i--) {
typename T::const_col_iterator ci = ri.begin();
for (; ci != ri.end(); ci++)
if (is_black(*ci)) {
bottom = i;
break;
}
if (bottom != -1)
break;
}
*(buf++) = feature_t(top) / feature_t(m.nrows());
*buf = feature_t(bottom) / feature_t(m.nrows());
}
template<class T>
void diagonal_projection(const T& image, feature_t* buf) {
typedef typename ImageFactory<T>::view_type* view_type;
view_type rotated_image = rotate(image, 45, 0, 1);
IntVector *proj_x = projection_cols(*rotated_image);
IntVector *proj_y = projection_rows(*rotated_image);
size_t i;
size_t size_x = (*proj_x).size();
unsigned int sum_x = 0;
double mean_x = 1.0;
if (size_x > 1) {
for (i = size_x/4; i < size_x*3/4+1; i++) {
sum_x += (*proj_x)[i];
}
mean_x = double(sum_x) / (size_x / 2);
}
size_t size_y = (*proj_y).size();
unsigned int sum_y = 0;
double mean_y = 1.0;
if (size_y > 1) {
for (i = size_y/4; i < size_y*3/4+1; i++) {
sum_y += (*proj_y)[i];
}
mean_y = double(sum_y) / (size_y / 2);
}
if (mean_y == 0.0)
*buf = 0.0;
else
*buf = (mean_x / mean_y);
delete proj_x;
delete proj_y;
delete rotated_image;
}
}
#endif
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