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<div class="section" id="release-notes-for-dipy-version-0-9">
<span id="release0-9"></span><h1>Release notes for DIPY version 0.9<a class="headerlink" href="#release-notes-for-dipy-version-0-9" title="Permalink to this headline">¶</a></h1>
<p>GitHub stats for 2015/01/06 - 2015/03/18 (tag: 0.8.0)</p>
<p>The following 12 authors contributed 235 commits.</p>
<ul class="simple">
<li>Ariel Rokem</li>
<li>Bago Amirbekian</li>
<li>Chantal Tax</li>
<li>Eleftherios Garyfallidis</li>
<li>Gabriel Girard</li>
<li>Marc-Alexandre Côté</li>
<li>Matthew Brett</li>
<li>Maxime Descoteaux</li>
<li>Omar Ocegueda</li>
<li>Qiyuan Tian</li>
<li>Samuel St-Jean</li>
<li>Stefan van der Walt</li>
</ul>
<p>We closed a total of 80 issues, 35 pull requests and 45 regular issues;
this is the full list (generated with the script
<code class="file docutils literal"><span class="pre">tools/github_stats.py</span></code>):</p>
<p>Pull Requests (35):</p>
<ul class="simple">
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/594/">PR #594</a>: DOC + PEP8: Mostly just line-wrapping.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/575/">PR #575</a>: Speeding up LiFE</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/595/">PR #595</a>: BF: csd predict multi</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/599/">PR #599</a>: BF: use dpy_rint instead of round for Windows</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/603/">PR #603</a>: Fix precision error in test_center_of_mass</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/601/">PR #601</a>: BF: Some versions (<0.18) of numpy don’t have nanmean.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/598/">PR #598</a>: Fixed undetected compilation errors prior to Cython 0.22</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/596/">PR #596</a>: DOC + PEP8: Clean up a few typos, PEP8 things, etc.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/593/">PR #593</a>: DOC: fixed some typos and added a notes section to make the document mor…</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/588/">PR #588</a>: Nf csd calibration</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/565/">PR #565</a>: Adding New Tissue Classifiers</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/589/">PR #589</a>: DOC: minor typographic corrections</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/584/">PR #584</a>: DOC: explain the changes made to the integration lenght in GQI2.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/568/">PR #568</a>: Quickbundles2</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/559/">PR #559</a>: SFM for multi b-value data</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/586/">PR #586</a>: BF: all_tensor_evecs should rotate from eye(3) to e0.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/574/">PR #574</a>: Affine registration PR1: Transforms.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/581/">PR #581</a>: BF: Normalization of GQI2 <cite>gqi_vector</cite>.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/580/">PR #580</a>: docstring for tensor fit was wrong</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/579/">PR #579</a>: RF: Compatibility with scipy 0.11</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/577/">PR #577</a>: BF: update cython signatures with except values</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/553/">PR #553</a>: RF: use cholesky to solve csd</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/552/">PR #552</a>: Small refactor of viz.regtools</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/569/">PR #569</a>: DOC: How to install vtk using conda.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/571/">PR #571</a>: Bf cart2sphere</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/557/">PR #557</a>: NF: geodesic anisotropy</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/566/">PR #566</a>: DOC: Some small fixes to the documentation of SFM.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/563/">PR #563</a>: RF: Cleanup functions that refer to some data that no longer exists here…</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/564/">PR #564</a>: fixed typo</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/561/">PR #561</a>: Added option to return the number of voxels fitting the fa threshold</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/554/">PR #554</a>: DOC: Link to @francopestilli’s matlab implementation of LiFE.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/556/">PR #556</a>: RF: change config variable to C define</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/550/">PR #550</a>: Added non-local means in Changelog</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/551/">PR #551</a>: Website update</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/549/">PR #549</a>: DOC: Update download link.</li>
</ul>
<p>Issues (45):</p>
<ul class="simple">
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/594/">#594</a>: DOC + PEP8: Mostly just line-wrapping.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/575/">#575</a>: Speeding up LiFE</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/595/">#595</a>: BF: csd predict multi</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/599/">#599</a>: BF: use dpy_rint instead of round for Windows</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/603/">#603</a>: Fix precision error in test_center_of_mass</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/602/">#602</a>: Precision error in test_feature_center_of_mass on 32-bit Linux</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/601/">#601</a>: BF: Some versions (<0.18) of numpy don’t have nanmean.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/598/">#598</a>: Fixed undetected compilation errors prior to Cython 0.22</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/597/">#597</a>: tracking module not building on cython 0.22</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/596/">#596</a>: DOC + PEP8: Clean up a few typos, PEP8 things, etc.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/404/">#404</a>: A better way to create a response function for CSD</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/593/">#593</a>: DOC: fixed some typos and added a notes section to make the document mor…</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/588/">#588</a>: Nf csd calibration</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/565/">#565</a>: Adding New Tissue Classifiers</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/589/">#589</a>: DOC: minor typographic corrections</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/584/">#584</a>: DOC: explain the changes made to the integration lenght in GQI2.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/568/">#568</a>: Quickbundles2</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/559/">#559</a>: SFM for multi b-value data</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/586/">#586</a>: BF: all_tensor_evecs should rotate from eye(3) to e0.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/585/">#585</a>: NF: Initial file strcuture skeleton for amico implementation</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/574/">#574</a>: Affine registration PR1: Transforms.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/581/">#581</a>: BF: Normalization of GQI2 <cite>gqi_vector</cite>.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/580/">#580</a>: docstring for tensor fit was wrong</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/579/">#579</a>: RF: Compatibility with scipy 0.11</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/577/">#577</a>: BF: update cython signatures with except values</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/553/">#553</a>: RF: use cholesky to solve csd</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/552/">#552</a>: Small refactor of viz.regtools</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/569/">#569</a>: DOC: How to install vtk using conda.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/571/">#571</a>: Bf cart2sphere</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/557/">#557</a>: NF: geodesic anisotropy</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/567/">#567</a>: NF - added function to fetch/read stanford pve maps</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/566/">#566</a>: DOC: Some small fixes to the documentation of SFM.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/414/">#414</a>: NF - added anatomically-constrained tractography (ACT) tissue classifier</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/560/">#560</a>: dipy.data: three_shells_voxels is not there</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/563/">#563</a>: RF: Cleanup functions that refer to some data that no longer exists here…</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/564/">#564</a>: fixed typo</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/561/">#561</a>: Added option to return the number of voxels fitting the fa threshold</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/554/">#554</a>: DOC: Link to @francopestilli’s matlab implementation of LiFE.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/556/">#556</a>: RF: change config variable to C define</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/555/">#555</a>: Use chatroom for dev communications</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/354/">#354</a>: Test failures of 0.7.1 on wheezy and squeeze 32bit</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/532/">#532</a>: SPARC buildbot fail in multiprocessing test</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/550/">#550</a>: Added non-local means in Changelog</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/551/">#551</a>: Website update</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/549/">#549</a>: DOC: Update download link.</li>
</ul>
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