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/usr/bin/ingo-admin-upgrade is in php-horde-ingo 3.2.16-1ubuntu1.

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The actual contents of the file can be viewed below.

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#!/usr/bin/php
<?php
/**
 * Perform admin upgrade tasks specific to Ingo.
 *
 * Copyright 2014-2017 Horde LLC (http://www.horde.org/)
 *
 * See the enclosed file COPYING for license information (ASL). If you
 * did not receive this file, see http://www.horde.org/licenses/apache.
 *
 * @author    Michael Slusarz <slusarz@horde.org>
 * @category  Horde
 * @copyright 2014-2017 Horde LLC
 * @license   http://www.horde.org/licenses/apache ASL
 * @package   Ingo
 */

$baseFile = __DIR__ . '/../lib/Application.php';
if (file_exists($baseFile)) {
    require_once $baseFile;
} else {
    require_once 'PEAR/Config.php';
    require_once PEAR_Config::singleton()
        ->get('horde_dir', null, 'pear.horde.org') . '/ingo/lib/Application.php';
}
Horde_Registry::appInit('ingo', array('cli' => true));

$parser = new Horde_Argv_Parser();
$parser->addOption('-t', '--task', array(
    'dest' => 'task',
    'help' => 'Upgrade task'
));
list($values,) = $parser->parseArgs();

$pkey = 'ingo:';

switch ($values->task) {
case 'backend_perms':
case 'backend_perms_force':
    $backends = array_keys(Ingo::loadBackends());
    $perms = $injector->getInstance('Horde_Perms');

    $cli->message($cli->bold('Upgrading permissions.'));

    if ($values->task == 'backend_perms_force') {
        foreach ($backends as $backend) {
            try {
                $perms->removePermission($perms->getPermission($pkey . $backend), true);
                $cli->message(sprintf('Force deletion of all "%s" backend permissions.', $backend));
            } catch (Horde_Exception $e) {}
        }
    }

    try {
        $pval = null;
        $remove = array();

        if ($perms->exists($pkey . 'allow_rules')) {
            $remove[] = $pkey . 'allow_rules';
            $pval = $perms->getPermission($pkey . 'allow_rules');
        }

        if ($perms->exists($pkey . 'max_rules')) {
            $remove[] = $pkey . 'max_rules';
            if (!$pval) {
                $pval = $perms->getPermission($pkey . 'max_rules');
            }
        }

        if ($pval) {
            foreach ($backends as $backend) {
                $parent_perm = $pkey . $backend;
                if (!$perms->exists($parent_perm)) {
                    $perms->addPermission($perms->newPermission($parent_perm));
                }

                $perm_edit = clone $pval;
                $perm_edit->setName($parent_perm . ':max_rules');
                $perms->addPermission($perm_edit);
                $cli->message(sprintf('Added "%s" permission to the "%s" backend.', 'max_rules', $backend));
            }

            foreach ($remove as $val) {
                $perms->removePermission($val);
                $cli->message(sprintf('Removed obsolete "%s" permission.', $val));
            }
        }
    } catch (Horde_Exception $e) {
        $cli->message(sprintf('Error upgrading "%s" permission: %s.', 'max_rules', $e->getMessage()), 'cli.error');
    }

    $cli->message($cli->bold('DONE upgrading permissions.'));
    break;
}