/usr/share/octave/packages/bim-1.1.5/bim1a_reaction.m is in octave-bim 1.1.5-4.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 | ## Copyright (C) 2006,2007,2008,2009,2010 Carlo de Falco, Massimiliano Culpo
##
## This file is part of:
## BIM - Diffusion Advection Reaction PDE Solver
##
## BIM is free software; you can redistribute it and/or modify
## it under the terms of the GNU General Public License as published by
## the Free Software Foundation; either version 2 of the License, or
## (at your option) any later version.
##
## BIM is distributed in the hope that it will be useful,
## but WITHOUT ANY WARRANTY; without even the implied warranty of
## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
## GNU General Public License for more details.
##
## You should have received a copy of the GNU General Public License
## along with BIM; If not, see <http://www.gnu.org/licenses/>.
##
## author: Carlo de Falco <cdf _AT_ users.sourceforge.net>
## author: Massimiliano Culpo <culpo _AT_ users.sourceforge.net>
## -*- texinfo -*-
## @deftypefn {Function File} {[@var{C}]} = @
## bim1a_reaction(@var{mesh},@var{delta},@var{zeta})
##
## Build the lumped finite element mass matrix for a diffusion
## problem.
##
## The equation taken into account is:
##
## @var{delta} * @var{zeta} * u = f
##
## where @var{delta} is an element-wise constant scalar function, while
## @var{zeta} is a piecewise linear conforming scalar function.
##
## @seealso{bim1a_rhs, bim1a_advection_diffusion, bim1a_laplacian,
## bim2a_reaction, bim3a_reaction}
## @end deftypefn
function [C] = bim1a_reaction(mesh,delta,zeta)
## Check input
if nargin != 3
error("bim1a_reaction: wrong number of input parameters.");
elseif !isvector(mesh)
error("bim1a_reaction: first argument is not a valid vector.");
endif
mesh = reshape (mesh, [], 1);
nnodes = numel (mesh);
nelems = nnodes - 1;
## Turn scalar input to a vector of appropriate size
if isscalar(delta)
delta = delta*ones(nelems,1);
endif
if isscalar(zeta)
zeta = zeta*ones(nnodes,1);
endif
if !( isvector(delta) && isvector(zeta) )
error("bim1a_reaction: coefficients are not valid vectors.");
elseif numel (delta) != nelems
error("bim1a_reaction: length of delta is not equal to the number of elements.");
elseif numel (zeta) != nnodes
error("bim1a_reaction: length of zeta is not equal to the number of nodes.");
endif
h = (mesh(2:end)-mesh(1:end-1)).*delta;
d0 = zeta.*[h(1)/2; (h(1:end-1)+h(2:end))/2; h(end)/2];
C = spdiags(d0, 0, nnodes,nnodes);
endfunction
%!test
%! x = linspace(0,1,101);
%! A = bim1a_reaction(x,1,1);
%! delta = ones(100,1);
%! zeta = ones(101,1);
%! B = bim1a_reaction(x,delta,zeta);
%! assert(A,B)
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