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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 | // ==========================================================================
// SeqAn - The Library for Sequence Analysis
// ==========================================================================
// Copyright (c) 2006-2016, Knut Reinert, FU Berlin
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of Knut Reinert or the FU Berlin nor the names of
// its contributors may be used to endorse or promote products derived
// from this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL KNUT REINERT OR THE FU BERLIN BE LIABLE
// FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
// DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
// SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
// CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
// LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
// OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
// DAMAGE.
//
// ==========================================================================
#ifndef SEQAN_HEADER_GRAPH_MSA_H
#define SEQAN_HEADER_GRAPH_MSA_H
// Seqan
#include <seqan/score.h>
#include <seqan/graph_types.h>
#include <seqan/graph_algorithms.h>
#include <seqan/graph_align.h>
#include <seqan/align.h>
//MSA
#include <seqan/graph_msa/graph_align_tcoffee_base.h>
#include <seqan/graph_msa/graph_align_tcoffee_library.h>
#include <seqan/graph_msa/graph_align_tcoffee_kmer.h>
#include <seqan/graph_msa/graph_align_tcoffee_distance.h>
#include <seqan/graph_msa/graph_align_tcoffee_guidetree.h>
#include <seqan/graph_msa/graph_align_tcoffee_io.h>
#include <seqan/graph_msa/graph_align_tcoffee_progressive.h>
#include <seqan/graph_msa/graph_align_tcoffee_refinement.h>
#include <seqan/graph_msa/graph_align_tcoffee_msa.h>
#endif //#ifndef SEQAN_HEADER_...
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