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<div class="textblock"><code>#include "<a class="el" href="seq_8h_source.html">seq.h</a>"</code><br />
<code>#include "<a class="el" href="symmatrix_8h_source.html">symmatrix.h</a>"</code><br />
<code>#include "<a class="el" href="progress_8h_source.html">progress.h</a>"</code><br />
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<p><a href="ktuple__pair_8h_source.html">Go to the source code of this file.</a></p>
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Data Structures</h2></td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structktuple__param__t.html">ktuple_param_t</a></td></tr>
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<tr class="memitem:a3b149b831a19964d1592a3c3a395dc2d"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="ktuple__pair_8h.html#a3b149b831a19964d1592a3c3a395dc2d">KTuplePairDist</a> (<a class="el" href="structsymmatrix__t.html">symmatrix_t</a> *tmat, <a class="el" href="structmseq__t.html">mseq_t</a> *mseq, int istart, int iend, int jstart, int jend, <a class="el" href="structktuple__param__t.html">ktuple_param_t</a> *aln_param, <a class="el" href="structprogress__t.html">progress_t</a> *prProgress, unsigned long int *ulStepNo, unsigned long int ulTotalStepNo)</td></tr>
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<h2 class="memtitle"><span class="permalink"><a href="#a3b149b831a19964d1592a3c3a395dc2d">§ </a></span>KTuplePairDist()</h2>
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<td class="memname">void KTuplePairDist </td>
<td>(</td>
<td class="paramtype"><a class="el" href="structsymmatrix__t.html">symmatrix_t</a> * </td>
<td class="paramname"><em>tmat</em>, </td>
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<td class="paramkey"></td>
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<td class="paramtype"><a class="el" href="structmseq__t.html">mseq_t</a> * </td>
<td class="paramname"><em>mseq</em>, </td>
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<td class="paramtype">int </td>
<td class="paramname"><em>istart</em>, </td>
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<td class="paramtype">int </td>
<td class="paramname"><em>iend</em>, </td>
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<td class="paramtype">int </td>
<td class="paramname"><em>jstart</em>, </td>
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<td class="paramtype">int </td>
<td class="paramname"><em>jend</em>, </td>
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<td class="paramtype"><a class="el" href="structktuple__param__t.html">ktuple_param_t</a> * </td>
<td class="paramname"><em>param_override</em>, </td>
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<td class="paramtype"><a class="el" href="structprogress__t.html">progress_t</a> * </td>
<td class="paramname"><em>prProgress</em>, </td>
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<td class="paramtype">unsigned long int * </td>
<td class="paramname"><em>ulStepNo</em>, </td>
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<td class="paramtype">unsigned long int </td>
<td class="paramname"><em>ulTotalStepNo</em> </td>
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<td>)</td>
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<p>Will compute ktuple scores and store in tmat Following values will be set: tmat[i][j], where istart <= i <iend and jstart <= j < jend i.e. zero-offset tmat data members have to be preallocated</p>
<p>if <a class="el" href="structktuple__param__t.html">ktuple_param_t</a> *aln_param == NULL defaults will be used </p>
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