This file is indexed.

/usr/share/doc/libbamtools-dev/html/_sam_constants_8h.html is in libbamtools-doc 2.4.1+dfsg-2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
<meta http-equiv="X-UA-Compatible" content="IE=9"/>
<meta name="generator" content="Doxygen 1.8.13"/>
<meta name="viewport" content="width=device-width, initial-scale=1"/>
<title>BamTools: SamConstants.h File Reference</title>
<link href="tabs.css" rel="stylesheet" type="text/css"/>
<script type="text/javascript" src="jquery.js"></script>
<script type="text/javascript" src="dynsections.js"></script>
<link href="search/search.css" rel="stylesheet" type="text/css"/>
<script type="text/javascript" src="search/searchdata.js"></script>
<script type="text/javascript" src="search/search.js"></script>
<link href="doxygen.css" rel="stylesheet" type="text/css" />
</head>
<body>
<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
<div id="titlearea">
<table cellspacing="0" cellpadding="0">
 <tbody>
 <tr style="height: 56px;">
  <td id="projectalign" style="padding-left: 0.5em;">
   <div id="projectname">BamTools
   &#160;<span id="projectnumber">2.4.1</span>
   </div>
  </td>
 </tr>
 </tbody>
</table>
</div>
<!-- end header part -->
<!-- Generated by Doxygen 1.8.13 -->
<script type="text/javascript">
var searchBox = new SearchBox("searchBox", "search",false,'Search');
</script>
<script type="text/javascript" src="menudata.js"></script>
<script type="text/javascript" src="menu.js"></script>
<script type="text/javascript">
$(function() {
  initMenu('',true,false,'search.php','Search');
  $(document).ready(function() { init_search(); });
});
</script>
<div id="main-nav"></div>
<!-- window showing the filter options -->
<div id="MSearchSelectWindow"
     onmouseover="return searchBox.OnSearchSelectShow()"
     onmouseout="return searchBox.OnSearchSelectHide()"
     onkeydown="return searchBox.OnSearchSelectKey(event)">
</div>

<!-- iframe showing the search results (closed by default) -->
<div id="MSearchResultsWindow">
<iframe src="javascript:void(0)" frameborder="0" 
        name="MSearchResults" id="MSearchResults">
</iframe>
</div>

<div id="nav-path" class="navpath">
  <ul>
<li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_da61e3e9a357748887e3ca8d7c5a0c16.html">api</a></li>  </ul>
</div>
</div><!-- top -->
<div class="header">
  <div class="summary">
<a href="#namespaces">Namespaces</a> &#124;
<a href="#var-members">Variables</a>  </div>
  <div class="headertitle">
<div class="title">SamConstants.h File Reference</div>  </div>
</div><!--header-->
<div class="contents">
<div class="textblock"><code>#include &quot;<a class="el" href="api__global_8h_source.html">api/api_global.h</a>&quot;</code><br />
<code>#include &lt;string&gt;</code><br />
</div>
<p><a href="_sam_constants_8h_source.html">Go to the source code of this file.</a></p>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="namespaces"></a>
Namespaces</h2></td></tr>
<tr class="memitem:namespace_bam_tools"><td class="memItemLeft" align="right" valign="top"> &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools.html">BamTools</a></td></tr>
<tr class="memdesc:namespace_bam_tools"><td class="mdescLeft">&#160;</td><td class="mdescRight">Contains all <a class="el" href="namespace_bam_tools.html" title="Contains all BamTools classes &amp; methods. ">BamTools</a> classes &amp; methods. <br /></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:namespace_bam_tools_1_1_constants"><td class="memItemLeft" align="right" valign="top"> &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html">BamTools::Constants</a></td></tr>
<tr class="memdesc:namespace_bam_tools_1_1_constants"><td class="mdescLeft">&#160;</td><td class="mdescRight">Provides basic constants for handling BAM files. <br /></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a>
Variables</h2></td></tr>
<tr class="memitem:a4dc947cf37ccd2db26a2e6f495d0b7b3"><td class="memItemLeft" align="right" valign="top">const char&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a4dc947cf37ccd2db26a2e6f495d0b7b3">BamTools::Constants::SAM_COLON</a> = ':'</td></tr>
<tr class="separator:a4dc947cf37ccd2db26a2e6f495d0b7b3"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:af1760b7edfc1298b8933e46d7a6e85ba"><td class="memItemLeft" align="right" valign="top">const char&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#af1760b7edfc1298b8933e46d7a6e85ba">BamTools::Constants::SAM_EQUAL</a> = '='</td></tr>
<tr class="separator:af1760b7edfc1298b8933e46d7a6e85ba"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a04941ea1a9a44bf6b99cbf9f182d1e67"><td class="memItemLeft" align="right" valign="top">const char&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a04941ea1a9a44bf6b99cbf9f182d1e67">BamTools::Constants::SAM_PERIOD</a> = '.'</td></tr>
<tr class="separator:a04941ea1a9a44bf6b99cbf9f182d1e67"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ae61b05f20c74192ed3e962d6a629fd2e"><td class="memItemLeft" align="right" valign="top">const char&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#ae61b05f20c74192ed3e962d6a629fd2e">BamTools::Constants::SAM_STAR</a> = '*'</td></tr>
<tr class="separator:ae61b05f20c74192ed3e962d6a629fd2e"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ad03ece1e8f540a42ee36e0eb833d12b3"><td class="memItemLeft" align="right" valign="top">const char&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#ad03ece1e8f540a42ee36e0eb833d12b3">BamTools::Constants::SAM_TAB</a> = '\t'</td></tr>
<tr class="separator:ad03ece1e8f540a42ee36e0eb833d12b3"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a996b57e1830ec53e3df7a7e1f1e80ae2"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a996b57e1830ec53e3df7a7e1f1e80ae2">BamTools::Constants::SAM_DIGITS</a> = &quot;0123456789&quot;</td></tr>
<tr class="separator:a996b57e1830ec53e3df7a7e1f1e80ae2"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a095be7b2fdb244feccdd82528d292859"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a095be7b2fdb244feccdd82528d292859">BamTools::Constants::SAM_CURRENT_VERSION</a> = &quot;1.4&quot;</td></tr>
<tr class="separator:a095be7b2fdb244feccdd82528d292859"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aee6159dc6e3f7209fa732f5bc9294544"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#aee6159dc6e3f7209fa732f5bc9294544">BamTools::Constants::SAM_HD_BEGIN_TOKEN</a> = &quot;@HD&quot;</td></tr>
<tr class="separator:aee6159dc6e3f7209fa732f5bc9294544"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a0883710c1fbb37c6963ebee0ccb101eb"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a0883710c1fbb37c6963ebee0ccb101eb">BamTools::Constants::SAM_HD_VERSION_TAG</a> = &quot;VN&quot;</td></tr>
<tr class="separator:a0883710c1fbb37c6963ebee0ccb101eb"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a0f0b211aeda8c3464f48352bf4e3b82f"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a0f0b211aeda8c3464f48352bf4e3b82f">BamTools::Constants::SAM_HD_SORTORDER_TAG</a> = &quot;SO&quot;</td></tr>
<tr class="separator:a0f0b211aeda8c3464f48352bf4e3b82f"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:af3042c03a4b7fefcb14d1f819c81afe8"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#af3042c03a4b7fefcb14d1f819c81afe8">BamTools::Constants::SAM_HD_GROUPORDER_TAG</a> = &quot;GO&quot;</td></tr>
<tr class="separator:af3042c03a4b7fefcb14d1f819c81afe8"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a1137bdeb0d037ed4d6cde982a53d86ec"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a1137bdeb0d037ed4d6cde982a53d86ec">BamTools::Constants::SAM_SQ_BEGIN_TOKEN</a> = &quot;@SQ&quot;</td></tr>
<tr class="separator:a1137bdeb0d037ed4d6cde982a53d86ec"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:afa271493666987fe6adcc1622ab53f21"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#afa271493666987fe6adcc1622ab53f21">BamTools::Constants::SAM_SQ_ASSEMBLYID_TAG</a> = &quot;AS&quot;</td></tr>
<tr class="separator:afa271493666987fe6adcc1622ab53f21"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ad06d1bfea017d27dc4c5bb881053c125"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#ad06d1bfea017d27dc4c5bb881053c125">BamTools::Constants::SAM_SQ_CHECKSUM_TAG</a> = &quot;M5&quot;</td></tr>
<tr class="separator:ad06d1bfea017d27dc4c5bb881053c125"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a33200e721ce47ea5b3c3f868398556fe"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a33200e721ce47ea5b3c3f868398556fe">BamTools::Constants::SAM_SQ_LENGTH_TAG</a> = &quot;LN&quot;</td></tr>
<tr class="separator:a33200e721ce47ea5b3c3f868398556fe"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a4f7f64cbf1b9867dd1c17065d4bf9164"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a4f7f64cbf1b9867dd1c17065d4bf9164">BamTools::Constants::SAM_SQ_NAME_TAG</a> = &quot;SN&quot;</td></tr>
<tr class="separator:a4f7f64cbf1b9867dd1c17065d4bf9164"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aeb9b3527c516157653a1aa021e7a4cb1"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#aeb9b3527c516157653a1aa021e7a4cb1">BamTools::Constants::SAM_SQ_SPECIES_TAG</a> = &quot;SP&quot;</td></tr>
<tr class="separator:aeb9b3527c516157653a1aa021e7a4cb1"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aab2777c1038ee71bf8d88e016fabd033"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#aab2777c1038ee71bf8d88e016fabd033">BamTools::Constants::SAM_SQ_URI_TAG</a> = &quot;UR&quot;</td></tr>
<tr class="separator:aab2777c1038ee71bf8d88e016fabd033"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a44454cde3e36ea93dfde57976a028090"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a44454cde3e36ea93dfde57976a028090">BamTools::Constants::SAM_RG_BEGIN_TOKEN</a> = &quot;@RG&quot;</td></tr>
<tr class="separator:a44454cde3e36ea93dfde57976a028090"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a77caaa01b98ab47c02643388e5831f4f"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a77caaa01b98ab47c02643388e5831f4f">BamTools::Constants::SAM_RG_DESCRIPTION_TAG</a> = &quot;DS&quot;</td></tr>
<tr class="separator:a77caaa01b98ab47c02643388e5831f4f"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:abd030018d924800a554e2d179b62d694"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#abd030018d924800a554e2d179b62d694">BamTools::Constants::SAM_RG_FLOWORDER_TAG</a> = &quot;FO&quot;</td></tr>
<tr class="separator:abd030018d924800a554e2d179b62d694"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aea7734f1ca755214acd4c757df25f6d4"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#aea7734f1ca755214acd4c757df25f6d4">BamTools::Constants::SAM_RG_ID_TAG</a> = &quot;ID&quot;</td></tr>
<tr class="separator:aea7734f1ca755214acd4c757df25f6d4"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a50d3a40383afffd6a37a878388b36c29"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a50d3a40383afffd6a37a878388b36c29">BamTools::Constants::SAM_RG_KEYSEQUENCE_TAG</a> = &quot;KS&quot;</td></tr>
<tr class="separator:a50d3a40383afffd6a37a878388b36c29"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a5420ec349bd3fa2ba1c32ab750fd6718"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a5420ec349bd3fa2ba1c32ab750fd6718">BamTools::Constants::SAM_RG_LIBRARY_TAG</a> = &quot;LB&quot;</td></tr>
<tr class="separator:a5420ec349bd3fa2ba1c32ab750fd6718"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a95e5e09f71b636ea4a65a5897b34afa0"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a95e5e09f71b636ea4a65a5897b34afa0">BamTools::Constants::SAM_RG_PLATFORMUNIT_TAG</a> = &quot;PU&quot;</td></tr>
<tr class="separator:a95e5e09f71b636ea4a65a5897b34afa0"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a80b33283c1c7c233227b4131e78ebd33"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a80b33283c1c7c233227b4131e78ebd33">BamTools::Constants::SAM_RG_PREDICTEDINSERTSIZE_TAG</a> = &quot;PI&quot;</td></tr>
<tr class="separator:a80b33283c1c7c233227b4131e78ebd33"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a4201e2b0e8de121b95826e6e82cb93e7"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a4201e2b0e8de121b95826e6e82cb93e7">BamTools::Constants::SAM_RG_PRODUCTIONDATE_TAG</a> = &quot;DT&quot;</td></tr>
<tr class="separator:a4201e2b0e8de121b95826e6e82cb93e7"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:afe3a74734ff2ea5f8e5a47e4cd92acf7"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#afe3a74734ff2ea5f8e5a47e4cd92acf7">BamTools::Constants::SAM_RG_PROGRAM_TAG</a> = &quot;PG&quot;</td></tr>
<tr class="separator:afe3a74734ff2ea5f8e5a47e4cd92acf7"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a0d517424c42c32b0cac1ab06d42c3ee4"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a0d517424c42c32b0cac1ab06d42c3ee4">BamTools::Constants::SAM_RG_SAMPLE_TAG</a> = &quot;SM&quot;</td></tr>
<tr class="separator:a0d517424c42c32b0cac1ab06d42c3ee4"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aa5e30b73707ee51e927d4f6a1d53f536"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#aa5e30b73707ee51e927d4f6a1d53f536">BamTools::Constants::SAM_RG_SEQCENTER_TAG</a> = &quot;CN&quot;</td></tr>
<tr class="separator:aa5e30b73707ee51e927d4f6a1d53f536"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a94c416f9cc9c0fde5f4ceb8ce454bee1"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a94c416f9cc9c0fde5f4ceb8ce454bee1">BamTools::Constants::SAM_RG_SEQTECHNOLOGY_TAG</a> = &quot;PL&quot;</td></tr>
<tr class="separator:a94c416f9cc9c0fde5f4ceb8ce454bee1"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a0ed9a275357e92bbb4dcc03df3f84ccc"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a0ed9a275357e92bbb4dcc03df3f84ccc">BamTools::Constants::SAM_PG_BEGIN_TOKEN</a> = &quot;@PG&quot;</td></tr>
<tr class="separator:a0ed9a275357e92bbb4dcc03df3f84ccc"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ac818a5c5c7910329242c5f3c326a53d3"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#ac818a5c5c7910329242c5f3c326a53d3">BamTools::Constants::SAM_PG_COMMANDLINE_TAG</a> = &quot;CL&quot;</td></tr>
<tr class="separator:ac818a5c5c7910329242c5f3c326a53d3"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a50cd815bb5dbb11ee5c8d8abdd83ec39"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a50cd815bb5dbb11ee5c8d8abdd83ec39">BamTools::Constants::SAM_PG_ID_TAG</a> = &quot;ID&quot;</td></tr>
<tr class="separator:a50cd815bb5dbb11ee5c8d8abdd83ec39"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a6e605af26908592f00b06588bd47ea5d"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a6e605af26908592f00b06588bd47ea5d">BamTools::Constants::SAM_PG_NAME_TAG</a> = &quot;PN&quot;</td></tr>
<tr class="separator:a6e605af26908592f00b06588bd47ea5d"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a13b1d3b04b9db66bab3976aac383f52d"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a13b1d3b04b9db66bab3976aac383f52d">BamTools::Constants::SAM_PG_PREVIOUSPROGRAM_TAG</a> = &quot;PP&quot;</td></tr>
<tr class="separator:a13b1d3b04b9db66bab3976aac383f52d"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ac7fc329a6ec0fd91da34f85cfa64c954"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#ac7fc329a6ec0fd91da34f85cfa64c954">BamTools::Constants::SAM_PG_VERSION_TAG</a> = &quot;VN&quot;</td></tr>
<tr class="separator:ac7fc329a6ec0fd91da34f85cfa64c954"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a9fa23d8339b7180dc4d950cab40c5a4a"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a9fa23d8339b7180dc4d950cab40c5a4a">BamTools::Constants::SAM_CO_BEGIN_TOKEN</a> = &quot;@CO&quot;</td></tr>
<tr class="separator:a9fa23d8339b7180dc4d950cab40c5a4a"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a6474731ad6aafec1930e54dd3e6922a8"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a6474731ad6aafec1930e54dd3e6922a8">BamTools::Constants::SAM_HD_SORTORDER_COORDINATE</a> = &quot;coordinate&quot;</td></tr>
<tr class="separator:a6474731ad6aafec1930e54dd3e6922a8"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a09820f6d6eb58028bc29ef855604d634"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a09820f6d6eb58028bc29ef855604d634">BamTools::Constants::SAM_HD_SORTORDER_QUERYNAME</a> = &quot;queryname&quot;</td></tr>
<tr class="separator:a09820f6d6eb58028bc29ef855604d634"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a51e7e505a0b484e512783270e889c43f"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a51e7e505a0b484e512783270e889c43f">BamTools::Constants::SAM_HD_SORTORDER_UNKNOWN</a> = &quot;unknown&quot;</td></tr>
<tr class="separator:a51e7e505a0b484e512783270e889c43f"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a2a0a356ccd7f3b6f74770486a0445faf"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a2a0a356ccd7f3b6f74770486a0445faf">BamTools::Constants::SAM_HD_SORTORDER_UNSORTED</a> = &quot;unsorted&quot;</td></tr>
<tr class="separator:a2a0a356ccd7f3b6f74770486a0445faf"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a397b6fe77af0e5b1bf1ecd74267b65d8"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a397b6fe77af0e5b1bf1ecd74267b65d8">BamTools::Constants::SAM_HD_GROUPORDER_NONE</a> = &quot;none&quot;</td></tr>
<tr class="separator:a397b6fe77af0e5b1bf1ecd74267b65d8"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a9e0b09f1e709a961a5a8619e7e2f4264"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a9e0b09f1e709a961a5a8619e7e2f4264">BamTools::Constants::SAM_HD_GROUPORDER_QUERY</a> = &quot;query&quot;</td></tr>
<tr class="separator:a9e0b09f1e709a961a5a8619e7e2f4264"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a5bf78a6e49cc46255bded799ea0c1f3a"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a5bf78a6e49cc46255bded799ea0c1f3a">BamTools::Constants::SAM_HD_GROUPORDER_REFERENCE</a> = &quot;reference&quot;</td></tr>
<tr class="separator:a5bf78a6e49cc46255bded799ea0c1f3a"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:add952cff9084af884308a80c372288d8"><td class="memItemLeft" align="right" valign="top">const unsigned int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#add952cff9084af884308a80c372288d8">BamTools::Constants::SAM_SQ_LENGTH_MIN</a> = 1</td></tr>
<tr class="separator:add952cff9084af884308a80c372288d8"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a6d3d5247b25a5464b1faec04624ed604"><td class="memItemLeft" align="right" valign="top">const unsigned int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a6d3d5247b25a5464b1faec04624ed604">BamTools::Constants::SAM_SQ_LENGTH_MAX</a> = 536870911</td></tr>
<tr class="separator:a6d3d5247b25a5464b1faec04624ed604"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a9a3f6e2e146280a3491d67b60a4660f2"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a9a3f6e2e146280a3491d67b60a4660f2">BamTools::Constants::SAM_RG_SEQTECHNOLOGY_CAPILLARY</a> = &quot;CAPILLARY&quot;</td></tr>
<tr class="separator:a9a3f6e2e146280a3491d67b60a4660f2"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a6973f23643e98e63c830875b00248b25"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a6973f23643e98e63c830875b00248b25">BamTools::Constants::SAM_RG_SEQTECHNOLOGY_HELICOS</a> = &quot;HELICOS&quot;</td></tr>
<tr class="separator:a6973f23643e98e63c830875b00248b25"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a420e24c36fef988522dfe4f444845f8d"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a420e24c36fef988522dfe4f444845f8d">BamTools::Constants::SAM_RG_SEQTECHNOLOGY_ILLUMINA</a> = &quot;ILLUMINA&quot;</td></tr>
<tr class="separator:a420e24c36fef988522dfe4f444845f8d"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aa27d63d2957b18174007b7600a541af4"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#aa27d63d2957b18174007b7600a541af4">BamTools::Constants::SAM_RG_SEQTECHNOLOGY_IONTORRENT</a> = &quot;IONTORRENT&quot;</td></tr>
<tr class="separator:aa27d63d2957b18174007b7600a541af4"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aae01cde6c677be076673143a1ca3343e"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#aae01cde6c677be076673143a1ca3343e">BamTools::Constants::SAM_RG_SEQTECHNOLOGY_LS454</a> = &quot;LS454&quot;</td></tr>
<tr class="separator:aae01cde6c677be076673143a1ca3343e"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aa4a7724701b8368f98fdb92dd799e102"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#aa4a7724701b8368f98fdb92dd799e102">BamTools::Constants::SAM_RG_SEQTECHNOLOGY_PACBIO</a> = &quot;PACBIO&quot;</td></tr>
<tr class="separator:aa4a7724701b8368f98fdb92dd799e102"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:adc82798d04d6b2f45d03fece39d350a0"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#adc82798d04d6b2f45d03fece39d350a0">BamTools::Constants::SAM_RG_SEQTECHNOLOGY_SOLID</a> = &quot;SOLID&quot;</td></tr>
<tr class="separator:adc82798d04d6b2f45d03fece39d350a0"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table>
</div><!-- contents -->
<!-- start footer part -->
<hr class="footer"/><address class="footer"><small>
Generated by &#160;<a href="http://www.doxygen.org/index.html">
<img class="footer" src="doxygen.png" alt="doxygen"/>
</a> 1.8.13
</small></address>
</body>
</html>