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/usr/share/kalzium/data/molecules/water.cml is in kalzium-data 4:17.12.3-0ubuntu1.

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<molecule>
 <atomArray>
  <atom id="a1" elementType="O" x3="-0.230656" y3="2.711862" z3="0.024653"/>
  <atom id="a2" elementType="H" x3="0.735610" y3="2.673645" z3="-0.031217"/>
  <atom id="a3" elementType="H" x3="-0.530164" y3="2.191793" z3="-0.735659"/>
 </atomArray>
 <bondArray>
  <bond atomRefs2="a1 a2" order="1"/>
  <bond atomRefs2="a1 a3" order="1"/>
 </bondArray>
</molecule>