/usr/share/doc/hyphy-common/
|
|
root:root
|
0o755
|
|
/usr/share/doc/hyphy-common/changelog.Debian.gz
|
application/gzip
|
root:root
|
0o644
|
948 bytes
|
/usr/share/doc/hyphy-common/copyright
|
text/plain
|
root:root
|
0o644
|
3.8 KB
|
/usr/share/doc/hyphy-common/examples/
|
|
root:root
|
0o755
|
|
/usr/share/doc/hyphy-common/examples/BatchLanguage/
|
|
root:root
|
0o755
|
|
/usr/share/doc/hyphy-common/examples/BatchLanguage/MatrixIndexing.bf
|
text/plain
|
root:root
|
0o644
|
1.5 KB
|
/usr/share/doc/hyphy-common/examples/BatchLanguage/profile_test.bf
|
text/plain
|
root:root
|
0o644
|
860 bytes
|
/usr/share/doc/hyphy-common/examples/Categories/
|
|
root:root
|
0o755
|
|
/usr/share/doc/hyphy-common/examples/Categories/data/
|
|
root:root
|
0o755
|
|
/usr/share/doc/hyphy-common/examples/Categories/data/aspectrin.nuc
|
text/plain
|
root:root
|
0o644
|
1.6 KB
|
/usr/share/doc/hyphy-common/examples/Categories/definitions+MLE.bf.gz
|
application/gzip
|
root:root
|
0o644
|
2.1 KB
|
/usr/share/doc/hyphy-common/examples/Categories/definitions.bf.gz
|
application/gzip
|
root:root
|
0o644
|
1.9 KB
|
/usr/share/doc/hyphy-common/examples/Categories/definitions2.bf.gz
|
application/gzip
|
root:root
|
0o644
|
2.4 KB
|
/usr/share/doc/hyphy-common/examples/Categories/definitions3.bf
|
text/plain
|
root:root
|
0o644
|
1.6 KB
|
/usr/share/doc/hyphy-common/examples/Categories/displayFunction.bf
|
text/plain
|
root:root
|
0o644
|
614 bytes
|
/usr/share/doc/hyphy-common/examples/ConstraintDefinition/
|
|
root:root
|
0o755
|
|
/usr/share/doc/hyphy-common/examples/ConstraintDefinition/ReplicateConstraint1.bf
|
text/plain
|
root:root
|
0o644
|
2.8 KB
|
/usr/share/doc/hyphy-common/examples/ConstraintDefinition/ReplicateConstraint2.bf
|
text/plain
|
root:root
|
0o644
|
3.3 KB
|
/usr/share/doc/hyphy-common/examples/ConstraintDefinition/ReplicateConstraint3.bf
|
text/plain
|
root:root
|
0o644
|
2.2 KB
|
/usr/share/doc/hyphy-common/examples/ConstraintDefinition/data/
|
|
root:root
|
0o755
|
|
/usr/share/doc/hyphy-common/examples/ConstraintDefinition/data/hiv.seq
|
text/plain
|
root:root
|
0o644
|
3.7 KB
|
/usr/share/doc/hyphy-common/examples/ConstraintDefinition/shared.bf
|
text/plain
|
root:root
|
0o644
|
1.5 KB
|
/usr/share/doc/hyphy-common/examples/DataFilters/
|
|
root:root
|
0o755
|
|
/usr/share/doc/hyphy-common/examples/DataFilters/HKY852blocks.bf
|
text/plain
|
root:root
|
0o644
|
2.5 KB
|
/usr/share/doc/hyphy-common/examples/DataFilters/HKY852blocks2models.bf
|
text/plain
|
root:root
|
0o644
|
2.7 KB
|
/usr/share/doc/hyphy-common/examples/DataFilters/data/
|
|
root:root
|
0o755
|
|
/usr/share/doc/hyphy-common/examples/DataFilters/data/actin2.flt.gz
|
application/gzip
|
root:root
|
0o644
|
3.0 KB
|
/usr/share/doc/hyphy-common/examples/MoreComplexModels/
|
|
root:root
|
0o755
|
|
/usr/share/doc/hyphy-common/examples/MoreComplexModels/ExonIntron.bf
|
text/plain
|
root:root
|
0o644
|
3.4 KB
|
/usr/share/doc/hyphy-common/examples/MoreComplexModels/Models/
|
|
root:root
|
0o755
|
|
/usr/share/doc/hyphy-common/examples/MoreComplexModels/Models/EI.mdl
|
text/plain
|
root:root
|
0o644
|
189 bytes
|
/usr/share/doc/hyphy-common/examples/MoreComplexModels/Models/MG94x2.mdl
|
text/plain
|
root:root
|
0o644
|
3.2 KB
|
/usr/share/doc/hyphy-common/examples/MoreComplexModels/aa.bf
|
text/plain
|
root:root
|
0o644
|
1.9 KB
|
/usr/share/doc/hyphy-common/examples/MoreComplexModels/data/
|
|
root:root
|
0o755
|
|
/usr/share/doc/hyphy-common/examples/MoreComplexModels/data/3.seq
|
text/plain
|
root:root
|
0o644
|
1.1 KB
|
/usr/share/doc/hyphy-common/examples/MoreComplexModels/data/stewart.aa
|
text/plain
|
root:root
|
0o644
|
968 bytes
|
/usr/share/doc/hyphy-common/examples/MoreComplexModels/data/ubiq.flt
|
text/plain
|
root:root
|
0o644
|
2.9 KB
|
/usr/share/doc/hyphy-common/examples/SimpleAnalyses/
|
|
root:root
|
0o755
|
|
/usr/share/doc/hyphy-common/examples/SimpleAnalyses/F81.bf
|
text/plain
|
root:root
|
0o644
|
2.0 KB
|
/usr/share/doc/hyphy-common/examples/SimpleAnalyses/HKY85.bf
|
text/plain
|
root:root
|
0o644
|
2.1 KB
|
/usr/share/doc/hyphy-common/examples/SimpleAnalyses/HKY85shared.bf
|
text/plain
|
root:root
|
0o644
|
2.3 KB
|
/usr/share/doc/hyphy-common/examples/SimpleAnalyses/JC69.bf
|
text/plain
|
root:root
|
0o644
|
1.9 KB
|
/usr/share/doc/hyphy-common/examples/SimpleAnalyses/K2P.bf
|
text/plain
|
root:root
|
0o644
|
2.0 KB
|
/usr/share/doc/hyphy-common/examples/SimpleAnalyses/K2Pshared.bf
|
text/plain
|
root:root
|
0o644
|
2.1 KB
|
/usr/share/doc/hyphy-common/examples/SimpleAnalyses/Non-Rev.bf
|
text/plain
|
root:root
|
0o644
|
2.9 KB
|
/usr/share/doc/hyphy-common/examples/SimpleAnalyses/REV.bf
|
text/plain
|
root:root
|
0o644
|
2.1 KB
|
/usr/share/doc/hyphy-common/examples/SimpleAnalyses/REVshared.bf
|
text/plain
|
root:root
|
0o644
|
2.3 KB
|
/usr/share/doc/hyphy-common/examples/SimpleAnalyses/data/
|
|
root:root
|
0o755
|
|
/usr/share/doc/hyphy-common/examples/SimpleAnalyses/data/hiv.nuc
|
text/plain
|
root:root
|
0o644
|
3.7 KB
|
/usr/share/doc/hyphy-common/examples/SimpleConstraints/
|
|
root:root
|
0o755
|
|
/usr/share/doc/hyphy-common/examples/SimpleConstraints/F81K81uf_relratio.bf.gz
|
application/gzip
|
root:root
|
0o644
|
1.9 KB
|
/usr/share/doc/hyphy-common/examples/SimpleConstraints/F81relrate.bf
|
text/plain
|
root:root
|
0o644
|
3.6 KB
|
/usr/share/doc/hyphy-common/examples/SimpleConstraints/F81relratio.bf
|
text/plain
|
root:root
|
0o644
|
3.7 KB
|
/usr/share/doc/hyphy-common/examples/SimpleConstraints/HKY85relrate.bf.gz
|
application/gzip
|
root:root
|
0o644
|
1.6 KB
|
/usr/share/doc/hyphy-common/examples/SimpleConstraints/HKY85relratio.bf.gz
|
application/gzip
|
root:root
|
0o644
|
1.7 KB
|
/usr/share/doc/hyphy-common/examples/SimpleConstraints/MolecularClockF81.bf
|
text/plain
|
root:root
|
0o644
|
3.8 KB
|
/usr/share/doc/hyphy-common/examples/SimpleConstraints/MolecularClockHKY85.bf
|
text/plain
|
root:root
|
0o644
|
3.5 KB
|
/usr/share/doc/hyphy-common/examples/SimpleConstraints/data/
|
|
root:root
|
0o755
|
|
/usr/share/doc/hyphy-common/examples/SimpleConstraints/data/3.seq
|
text/plain
|
root:root
|
0o644
|
1.4 KB
|
/usr/share/doc/hyphy-common/examples/SimpleConstraints/data/aspectrin1.nuc
|
text/plain
|
root:root
|
0o644
|
1.6 KB
|
/usr/share/doc/hyphy-common/examples/SimpleConstraints/data/aspectrin2.nuc
|
text/plain
|
root:root
|
0o644
|
2.0 KB
|
/usr/share/doc/hyphy-common/examples/SimpleConstraints/data/molclock.seq.gz
|
application/gzip
|
root:root
|
0o644
|
4.9 KB
|
/usr/share/doc/hyphy-common/examples/Simulation/
|
|
root:root
|
0o755
|
|
/usr/share/doc/hyphy-common/examples/Simulation/PBootstrapHetRates.bf
|
text/plain
|
root:root
|
0o644
|
3.9 KB
|
/usr/share/doc/hyphy-common/examples/Simulation/ParametricBootstrap.bf
|
text/plain
|
root:root
|
0o644
|
3.7 KB
|
/usr/share/doc/hyphy-common/examples/Simulation/RelativeRatePBS.bf.gz
|
application/gzip
|
root:root
|
0o644
|
1.9 KB
|
/usr/share/doc/hyphy-common/examples/Simulation/data/
|
|
root:root
|
0o755
|
|
/usr/share/doc/hyphy-common/examples/Simulation/data/3.seq
|
text/plain
|
root:root
|
0o644
|
1.4 KB
|
/usr/share/doc/hyphy-common/examples/Simulation/data/hiv.nuc
|
text/plain
|
root:root
|
0o644
|
3.7 KB
|