/usr/share/gamgi/dat/molecule/all.xml is in gamgi-data 0.17.3-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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<!DOCTYPE gml SYSTEM "http://www.gamgi.org/dtd/gamgi.dtd">
<gml>
<layer>
<molecule name="H2SO4">
<atom id="1" element="S" x="6.9707" y="2.1482" z="-0.0563"/>
<atom id="2" element="O" x="5.7234" y="1.7273" z="-0.6263"/>
<atom id="3" element="O" x="8.1727" y="1.8597" z="-0.7582"/>
<atom id="4" element="O" x="6.9342" y="3.6732" z="0.1124"/>
<atom id="5" element="O" x="6.9940" y="1.6029" z="1.3658"/>
<atom id="6" element="H" x="6.2432" y="3.8985" z="0.4999"/>
<atom id="7" element="H" x="7.6032" y="1.5692" z="1.5682"/>
<bond parent1="1" parent2="2" order="2.00"/>
<bond parent1="1" parent2="3" order="2.00"/>
<bond parent1="1" parent2="4"/>
<bond parent1="1" parent2="5"/>
<bond parent1="4" parent2="6"/>
<bond parent1="5" parent2="7"/>
</molecule>
<molecule name="H2SO4">
<atom id="8" element="S" x="6.3964" y="-1.5110" z="-0.0689"/>
<atom id="9" element="O" x="5.1426" y="-1.6036" z="-0.7598"/>
<atom id="10" element="O" x="7.5627" y="-2.0207" z="-0.7018"/>
<atom id="11" element="O" x="6.6820" y="-0.0304" z="0.2166"/>
<atom id="12" element="O" x="6.1726" y="-2.1327" z="1.3036"/>
<atom id="13" element="H" x="6.0261" y="0.3214" z="0.5693"/>
<atom id="14" element="H" x="6.7390" y="-2.3155" z="1.5466"/>
<bond parent1="8" parent2="9" order="2.00"/>
<bond parent1="8" parent2="10" order="2.00"/>
<bond parent1="8" parent2="11"/>
<bond parent1="8" parent2="12"/>
<bond parent1="11" parent2="13"/>
<bond parent1="12" parent2="14"/>
</molecule>
<molecule name="eugenol">
<atom id="35" element="H" x="-3.7772" y="1.0400" z="0.9795"/>
<bond parent1="22" parent2="35"/>
<atom id="15" element="C" x="-0.8422" y="-1.7156" z="1.8195"/>
<atom id="16" element="C" x="0.4085" y="-1.2904" z="1.3712"/>
<atom id="17" element="C" x="0.5380" y="-0.0605" z="0.7206"/>
<atom id="18" element="C" x="-0.6188" y="0.6953" z="0.5102"/>
<atom id="19" element="C" x="-1.8954" y="0.2437" z="0.8714"/>
<atom id="20" element="C" x="-1.9911" y="-0.9502" z="1.6021"/>
<atom id="21" element="O" x="-3.2059" y="-1.3556" z="2.0637"/>
<atom id="22" element="O" x="-2.9951" y="1.0290" z="0.7065"/>
<atom id="23" element="C" x="1.8836" y="0.4587" z="0.2730"/>
<atom id="24" element="C" x="1.9136" y="0.5982" z="-1.2273"/>
<atom id="25" element="C" x="2.0820" y="1.7646" z="-1.8654"/>
<atom id="26" element="H" x="-0.9261" y="-2.6695" z="2.3653"/>
<atom id="27" element="H" x="1.2944" y="-1.9154" z="1.5641"/>
<atom id="28" element="H" x="-0.5263" y="1.6852" z="0.0323"/>
<atom id="29" element="H" x="-3.8345" y="-0.6494" z="1.8373"/>
<atom id="30" element="H" x="2.7054" y="-0.2279" z="0.5784"/>
<atom id="31" element="H" x="2.0732" y="1.4341" z="0.7763"/>
<atom id="32" element="H" x="1.7821" y="-0.3239" z="-1.8195"/>
<atom id="33" element="H" x="2.2133" y="2.7068" z="-1.3115"/>
<atom id="34" element="H" x="2.0912" y="1.8155" z="-2.9648"/>
<bond parent1="15" parent2="16" order="1.50"/>
<bond parent1="15" parent2="20" order="1.50"/>
<bond parent1="15" parent2="26"/>
<bond parent1="16" parent2="17" order="1.50"/>
<bond parent1="16" parent2="27"/>
<bond parent1="17" parent2="18" order="1.50"/>
<bond parent1="17" parent2="23"/>
<bond parent1="18" parent2="19" order="1.50"/>
<bond parent1="18" parent2="28"/>
<bond parent1="19" parent2="20" order="1.50"/>
<bond parent1="19" parent2="22"/>
<bond parent1="20" parent2="21"/>
<bond parent1="21" parent2="29"/>
<bond parent1="23" parent2="24"/>
<bond parent1="23" parent2="30"/>
<bond parent1="23" parent2="31"/>
<bond parent1="24" parent2="25" order="2.00"/>
<bond parent1="24" parent2="32"/>
<bond parent1="25" parent2="33"/>
<bond parent1="25" parent2="34"/>
</molecule>
</layer>
</gml>
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