This file is indexed.

/usr/include/fflas-ffpack/fflas/fflas_sparse/sell/sell_utils.inl is in fflas-ffpack-common 2.2.2-5.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
/* -*- mode: C++; tab-width: 8; indent-tabs-mode: t; c-basic-offset: 8 -*- */
// vim:sts=8:sw=8:ts=8:noet:sr:cino=>s,f0,{0,g0,(0,\:0,t0,+0,=s
/*
 * Copyright (C) 2014 the FFLAS-FFPACK group
 *
 * Written by   Bastien Vialla <bastien.vialla@lirmm.fr>
 *
 *
 * ========LICENCE========
 * This file is part of the library FFLAS-FFPACK.
 *
 * FFLAS-FFPACK is free software: you can redistribute it and/or modify
 * it under the terms of the  GNU Lesser General Public
 * License as published by the Free Software Foundation; either
 * version 2.1 of the License, or (at your option) any later version.
 *
 * This library is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
 * Lesser General Public License for more details.
 *
 * You should have received a copy of the GNU Lesser General Public
 * License along with this library; if not, write to the Free Software
 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301 USA
 * ========LICENCE========
 *.
 */

#ifndef __FFLASFFPACK_fflas_sparse_sell_utils_INL
#define __FFLASFFPACK_fflas_sparse_sell_utils_INL

namespace FFLAS {

template <class Field>
inline void fspmv(const Field &F, const Sparse<Field, SparseMatrix_t::SELL_ZO> &A, typename Field::ConstElement_ptr x,
                  typename Field::Element_ptr y, FieldCategories::ModularTag) {
    fspmv(F, A, x, y, FieldCategories::UnparametricTag());
    freduce(F, A.m, y, 1);
}

template <class Field> inline void sparse_delete(const Sparse<Field, SparseMatrix_t::SELL> &A) {
    fflas_delete(A.dat);
    fflas_delete(A.col);
    fflas_delete(A.st);
    fflas_delete(A.chunkSize);
}

template <class Field> inline void sparse_delete(const Sparse<Field, SparseMatrix_t::SELL_ZO> &A) {
    fflas_delete(A.col);
    fflas_delete(A.st);
    fflas_delete(A.chunkSize);
}

namespace sell_details {

struct Info {
    uint64_t size = 0;
    uint64_t perm = 0;
    uint64_t begin = 0;

    Info(uint64_t it, uint64_t s, uint64_t p) : size(s), perm(p), begin(it) {}
    Info() = default;
    Info(const Info &) = default;
    Info(Info &&) = default;

    Info &operator=(const Info &) = default;
    Info &operator=(Info &&) = default;
};

template <class ValT, class IdxT> struct Coo {
    using Self = Coo<ValT, IdxT>;

    ValT val = 0;
    IdxT row = 0;
    IdxT col = 0;

    Coo(ValT v, IdxT r, IdxT c) : val(v), row(r), col(c) {}
    Coo() = default;
    Coo(const Self &) = default;
    Coo(Self &&) = default;

    Self &operator=(const Self &) = default;
    Self &operator=(Self &&) = default;
};
}

template <class Field> inline void sparse_print(const Sparse<Field, SparseMatrix_t::SELL> &A) {
    uint64_t it = 0;
    for (size_t i = 0; i < A.nChunks; ++i) {
        for (size_t k = 0; k < A.chunk; ++k) {
            std::cout << i *A.chunk + k << " : ";
            for (size_t j = 0; j < A.chunkSize[i]; ++j) {
                std::cout << A.dat[it + j * A.chunk + k] << " ";
            }
            std::cout << std::endl;
        }
        it += A.chunkSize[i] * A.chunk;
    }
}

template <class Field, class IndexT>
inline void sparse_init(const Field &F, Sparse<Field, SparseMatrix_t::SELL> &A, const IndexT *row, const IndexT *col,
                        typename Field::ConstElement_ptr dat, uint64_t rowdim, uint64_t coldim, uint64_t nnz,
                        uint64_t sigma = 0) {
    using namespace sell_details;
    using coo = Coo<typename Field::Element, IndexT>;
    if (!sigma)
        sigma = rowdim;
    A.kmax = Protected::DotProdBoundClassic(F, F.one);
    A.m = rowdim;
    A.n = coldim;
    A.nnz = nnz;
#ifdef __FFLASFFPACK_HAVE_SSE4_1_INSTRUCTIONS
    using simd = Simd<typename Field::Element>;
    A.chunk = simd::vect_size;
#else
    A.chunk = 8;
#endif
    index_t m = (A.m % A.chunk == 0) ? A.m : ROUND_DOWN(A.m, A.chunk) + A.chunk;
    A.nChunks = (m / A.chunk);

    std::vector<coo> data;
    std::vector<Info> infos(A.nChunks * A.chunk);

    for (uint64_t i = 0; i < nnz; ++i) {
        data.emplace_back(dat[i], row[i], col[i]);
    }

    IndexT currow = row[0];

    infos[currow].begin = 0;
    for (uint64_t i = 0; i < nnz; ++i) {
        if (row[i] != currow) {
            currow = row[i];
            infos[currow].begin = i;
        }
        infos[row[i]].size++;
    }

    A.maxrow = (std::max_element(infos.begin(), infos.end(),
                                 [](const Info &a, const Info &b) { return a.size >= b.size; }))->size;

    // cout << "maxrow : " << A.maxrow << endl;

    if (A.maxrow < A.kmax)
        A.delayed = true;

    for (uint64_t i = 0; i < rowdim; ++i) {
        infos[i].perm = i;
    }

#ifdef SELL_DEBUG
    for (auto &x : infos) {
        cout << x.size << " ";
    }
    std::cout << std::endl;
#endif

    uint64_t it = 0;
    for (; it < ROUND_DOWN(rowdim, sigma); it += sigma) {
        std::sort(infos.begin() + it, infos.begin() + it + sigma,
                  [](const Info &a, const Info &b) { return a.size >= b.size; });
    }
    if (it != rowdim) {
        std::sort(infos.begin() + it, infos.end(), [](Info a, Info b) { return a.size >= b.size; });
    }

    // cout << "sorted : " << std::is_sorted(infos.begin(), infos.end(), [](Info
    // a, Info b){
    // 	return a.size >= b.size;
    // }) << endl;

    for (size_t i = 0; i < infos.size(); ++i) {
        if (infos[i].begin > nnz)
            std::cout << "ERROR sort " << i << " size : " << infos[i].size << " begin : " << infos[i].begin
                 << " perm : " << infos[i].perm << std::endl;
    }

#ifdef SELL_DEBUG
    for (auto &x : infos) {
        cout << x.size << " ";
    }
    std::cout << std::endl;
#endif

    A.perm = fflas_new<index_t>(rowdim, Alignment::CACHE_LINE);

    // cout << "perm : ";
    for (uint64_t i = 0; i < rowdim; ++i) {
        // cout << "(" << i << " , " << infos[i].perm << ") ";
        A.perm[infos[i].perm] = i;
    }

    // for(size_t i = 0 ; i < A.m ; ++i)
    //           cout << A.perm[i] << " ";
    //       cout << endl;
    // cout << endl;

    // add info if rowdim%chunk != 0, with empty infos (size = 0, begin = 0)
    // infos.resize(A.nChunks*A.chunk);

    // for(auto & x:infos)
    // 	if(x.begin > nnz)
    // 		cout << "ERROR resize" << endl;

    A.chunkSize = fflas_new<index_t>(A.nChunks, Alignment::CACHE_LINE);

    for (uint64_t i = 0; i < A.nChunks; ++i)
        A.chunkSize[i] = 0;

    for (uint64_t i = 0; i < A.nChunks; ++i) {
        for (uint64_t j = 0; j < A.chunk; ++j) {
            if (infos[i * A.chunk + j].size >= A.chunkSize[i])
                A.chunkSize[i] = infos[i * A.chunk + j].size;
        }
    }

#ifdef SELL_DEBUG
    for (uint64_t i = 0; i < A.nChunks; ++i)
        cout << "chunk " << i << " : " << A.chunkSize[i] << endl;
    ;
#endif
    uint64_t sum = 0;
    for (uint64_t i = 0; i < A.nChunks; ++i)
        sum += A.chunkSize[i];
#ifdef SELL_DEBUG
    cout << "sum :  " << sum << " chunk : " << A.chunk << endl;
#endif
    A.col = fflas_new<index_t>(sum * A.chunk, Alignment::CACHE_LINE);
    A.dat = fflas_new(F, sum * A.chunk, 1, Alignment::CACHE_LINE);
    A.nElements = sum * A.chunk;

    for (uint64_t i = 0; i < sum * A.chunk; ++i) {
        A.col[i] = 0;
        F.assign(A.dat[i], F.zero);
    }

    it = 0;
    for (uint64_t i = 0; i < A.nChunks; ++i) {
        for (uint64_t k = 0; k < A.chunk; ++k) {
            uint64_t start = infos[i * A.chunk + k].begin;
#ifdef SELL_DEBUG
            cout << it << " " << start << " " << infos[i * A.chunk + k].size << endl;
            cout << "	";
#endif
            for (uint64_t j = 0; j < infos[i * A.chunk + k].size; ++j) {
                if (it + k + j * A.chunk >= sum * A.chunk)
                    std::cout << "error : " << it + k + j *A.chunk << " " << sum *A.chunk << std::endl;
                A.dat[it + k + j * A.chunk] = data[start + j].val;
                A.col[it + k + j * A.chunk] = data[start + j].col;
#ifdef SELL_DEBUG
                cout << data[start + j].val << " ";
#endif
            }
#ifdef SELL_DEBUG
            cout << endl;
#endif
        }
        it += A.chunkSize[i] * A.chunk;
    }
    A.st = fflas_new<uint64_t>(A.nChunks, Alignment::CACHE_LINE);
    A.st[0] = 0;
    for (uint64_t i = 1; i < A.nChunks; ++i) {
        A.st[i] = A.chunkSize[i - 1] * A.chunk;
    }
    for (uint64_t i = 1; i < A.nChunks; ++i) {
        A.st[i] += A.st[i - 1];
    }
#ifdef SELL_DEBUG
    cout << "st : ";
    for (uint64_t i = 0; i < A.nChunks; ++i)
        cout << A.st[i] << " ";
    cout << endl;
#endif
}

template <class Field, class IndexT>
inline void sparse_init(const Field &F, Sparse<Field, SparseMatrix_t::SELL_ZO> &A, const IndexT *row, const IndexT *col,
                        typename Field::ConstElement_ptr dat, uint64_t rowdim, uint64_t coldim, uint64_t nnz) {}
} // FFLAS
#endif