This file is indexed.

/usr/bin/mkstatic is in emboss-explorer 2.2.0-9.

This file is owned by root:root, with mode 0o755.

The actual contents of the file can be viewed below.

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#!/usr/bin/perl

use strict;
use warnings;

use Getopt::Long;
use Pod::Usage;

use EMBOSS::GUI;
use EMBOSS::GUI::Conf;
use EMBOSS::GUI::XHTML;

my $frames = 1;
my $cgi = "/cgi-bin/emboss";
GetOptions(
	"frames!" => \$frames,
	"cgi=s" => \$cgi
) or pod2usage();
my $dir = shift || $EMBOSS::GUI::Conf::HTML_PATH;
-d $dir && -w $dir
	or pod2usage("$dir is not a writeable directory");

print <<EOF;

I am about to dump static EMBOSS Explorer pages to the following directory:

	$dir

These pages will overwrite existing HTML at this location.
EOF
while (1) {
	print "\nDo you wish to continue (y/n)? ";
	my $response = <STDIN>;
	if ($response =~ /^y/i) {
		last;
	} elsif ($response =~ /^n/i) {
		exit;
	}
}

#my $style_url = $EMBOSS::GUI::Conf::STYLE_URL =~
#	/^$EMBOSS::GUI::Conf::HTML_URL\/(.*)/ ? $1: $EMBOSS::GUI::Conf::STYLE_URL;
my $style_url = $EMBOSS::GUI::Conf::STYLE_URL;
#my $image_url = $EMBOSS::GUI::Conf::IMAGE_URL =~
#	/^$EMBOSS::GUI::Conf::HTML_URL\/(.*)/ ?	$1 : $EMBOSS::GUI::Conf::IMAGE_URL;
my $image_url = $EMBOSS::GUI::Conf::IMAGE_URL;
#my $manual_url = $EMBOSS::GUI::Conf::MANUAL_URL =~
#	/^$EMBOSS::GUI::Conf::HTML_URL\/(.*)/ ? $1 : $EMBOSS::GUI::Conf::MANUAL_URL;
my $manual_url = $EMBOSS::GUI::Conf::MANUAL_URL;
my $html = EMBOSS::GUI::XHTML->new(
	frames => $frames,
	style_url => $style_url,
	image_url => $image_url,
	manual_url => $manual_url,
	script_url => $cgi,
	static => 1
);
my $emboss = EMBOSS::GUI->new(
	html => $html
);
my $pages = 0;
if ($frames) {
	dump_page("$dir/index.html", $html->frameset_page);
	dump_page("$dir/alphamenu.html", $html->menu_page($emboss->apps));
	dump_page("$dir/groupmenu.html", $html->menu_page($emboss->groups));
	dump_page("$dir/intro.html", $html->intro_page);
}
my $manual_dir = $EMBOSS::GUI::Conf::MANUAL_URL;
$manual_dir =~ s/$EMBOSS::GUI::Conf::HTML_URL/$dir/;
-d $manual_dir or mkdir $manual_dir
	or die "error creating directory $manual_dir: $!";
foreach my $aref ($emboss->apps) {
	my ($app, $doc) = @$aref;
	if (!$emboss->is_excluded($app)) {
		if (my $acdfile = $emboss->_find_acd($app)) {
			if (my $acd = eval { EMBOSS::ACD->new($acdfile) }) {
				dump_page("$dir/$app.html", $html->input_page($acd));
			} else {
				warn "failed to parse $acdfile\n";
			}
				
		} else {
			warn "failed to locate ACD file for $app\n";
		}
		if (my $manual = $emboss->_find_manual($app)) {
			dump_page("$manual_dir/$app.html",
				$html->manual_page($app, $manual));
		} else {
			warn "failed to locate manual for $app\n";
		}
	}
}

print <<EOF;

Done.  If the location above is not the same location given during the
installation of EMBOSS Explorer, the style, images, and manual directories
will have to be copied over to the new location.

EOF

sub dump_page {
	my ($path, $content) = @_;

	++$pages;
	$emboss->_write_to_file($path, $content)
		or die "error writing to $path: $!\n";
}

=head1 NAME

mkstatic

=head1 AUTHOR

Luke McCarthy <lukem@gene.pbi.nrc.ca>

=head1 SYNOPSIS

mkstatic
[ --noframes ]
[ --cgi URL ]
[ DIRECTORY ]

=head1 DESCRIPTION

TODO...

=head1 OPTIONS

=over4

=item --frames | --noframes

Controls whether or not the generated HTML has a separate frame for the
application menu.  The default is to use a separate frame.

=item --cgi URL

Use the specified URL as the location of the CGI script that application input
forms are submitted to.

=back

=head1 COPYRIGHT

Copyright (c) 2004 Luke McCarthy.  All rights reserved.  This program is free
software.  You may copy or redistribute it under the same terms as Perl itself.