/usr/share/doc/bowtie2/examples/scripts/ is in bowtie2-examples 2.3.4.1-1.
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/usr/share/doc/bowtie2/examples/scripts/make_h_sapiens_ncbi37.sh
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/usr/share/doc/bowtie2/examples/scripts/make_hg18.sh
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/usr/share/doc/bowtie2/examples/scripts/make_mm10.sh
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/usr/share/doc/bowtie2/examples/scripts/test/README.md
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/usr/share/doc/bowtie2/examples/scripts/test/benchmark/
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/usr/share/doc/bowtie2/examples/scripts/test/bt2face.py
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/usr/share/doc/bowtie2/examples/scripts/test/large_idx.py
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/usr/share/doc/bowtie2/examples/scripts/test/simple_tests.sh
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