/usr/bin/bacteria_tradis is in bio-tradis 1.3.3+dfsg-3.
This file is owned by root:root, with mode 0o755.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 | #!/usr/bin/env perl
package Bio::Tradis::Bin::RunTradis;
# ABSTRACT: Perform full tradis analysis
# PODNAME: run_tradis
=head1 SYNOPSIS
Take a fastq, reference and a tag and generates insertion
site plots for use in Artemis
=cut
BEGIN { unshift( @INC, '../lib' ) }
BEGIN { unshift( @INC, './lib' ) }
BEGIN { unshift( @INC, '/software/pathogen/internal/prod/lib/' ) }
use Bio::Tradis::CommandLine::TradisAnalysis;
Bio::Tradis::CommandLine::TradisAnalysis->new(args => \@ARGV, script_name => $0)->run;
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