/usr/share/perl5/Biber/Entry.pm is in biber 2.9-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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use v5.24;
use strict;
use warnings;
use Biber::Utils;
use Biber::Internals;
use Biber::Constants;
use Data::Dump qw( pp );
use Digest::MD5 qw( md5_hex );
use Encode;
use Log::Log4perl qw( :no_extra_logdie_message );
use List::Util qw( first );
my $logger = Log::Log4perl::get_logger('main');
=encoding utf-8
=head1 NAME
Biber::Entry - Biber::Entry objects
=head2 new
Initialize a Biber::Entry object
There are three types of field possible in an entry:
* data - These are fields which derive directly from or are themselves fields in the
data source. Things like YEAR, MONTH, DAY etc. are such fields which are
derived from, for example, the DATE field. They are part of the original
data implicitly, derived from a field.
* derived - These are fields, often meta-information like labelname, labelalpha etc.
which are more removed from the data fields.
The reason for this division is largely the entry cloning required for the related entry and
inheritance features. When we clone an entry or copy some fields from one entry to another
we generally don't want the "derived" category as such derived meta-fields will often need
to be re-created or ignored so we need to know which are the actual "data" fields to
copy/clone.
=cut
sub new {
my $class = shift;
my $obj = shift;
my $self;
if (defined($obj) and ref($obj) eq 'HASH') {
$self = bless $obj, $class;
}
else {
$self = bless {}, $class;
}
return $self;
}
=head2 relclone
Recursively create related entry clones starting with an entry
=cut
sub relclone {
my $self = shift;
my $citekey = $self->get_field('citekey');
my $secnum = $Biber::MASTER->get_current_section;
my $section = $Biber::MASTER->sections->get_section($secnum);
my $dmh = Biber::Config->get_dm_helpers;
if (my $relkeys = $self->get_field('related')) {
if ($logger->is_debug()) {# performance tune
$logger->debug("Found RELATED field in '$citekey' with contents " . join(',', @$relkeys));
}
my @clonekeys;
foreach my $relkey (@$relkeys) {
# Resolve any alias
my $nrelkey = $section->get_citekey_alias($relkey) // $relkey;
if ($logger->is_debug()) {# performance tune
$logger->debug("Resolved RELATED key alias '$relkey' to '$nrelkey'") if $relkey ne $nrelkey;
$logger->debug("Looking at RELATED key '$relkey'");
}
$relkey = $nrelkey;
# Loop avoidance, in case we are back in an entry again in the guise of a clone
# We can record the related clone but don't create it again
if (my $ck = $section->get_keytorelclone($relkey)) {
if ($logger->is_debug()) {# performance tune
$logger->debug("Found RELATED key '$relkey' already has clone '$ck'");
}
push @clonekeys, $ck;
# Save graph information if requested
if (Biber::Config->getoption('output_format') eq 'dot') {
Biber::Config->set_graph('related', $ck, $relkey, $citekey);
}
}
else {
my $relentry = $section->bibentry($relkey);
# Digest::MD5 can't deal with straight UTF8 so encode it first (via NFC as this is "output")
my $clonekey = md5_hex(encode_utf8($relkey));
push @clonekeys, $clonekey;
my $relclone = $relentry->clone($clonekey);
if ($logger->is_debug()) {# performance tune
$logger->debug("Created new related clone for '$relkey' with clone key '$clonekey'");
}
# *datesplit is a special non datafield and needs to be copied for things like era
# output
foreach my $df ($dmh->{datefields}->@*) {
$df =~ s/date$//;
if (my $ds = $self->get_field("${df}datesplit")) {
$relclone->set_field("${df}datesplit", $ds);
}
}
# Set related clone options
if (my $relopts = $self->get_field('relatedoptions')) {
# Check if this clone was also directly cited. If so, set skipbib/skipbiblist
# if they are unset as otherwise this entry would appear twice in bibliographies
# but with different keys.
if ($section->has_citekey($relkey)) {
$relopts = remove_entry_options($relopts, {skipbib => 1, skipbiblist => 1});
push @$relopts, ('skipbib=true', 'skipbiblist=true');
}
process_entry_options($clonekey, $relopts);
$relclone->set_datafield('options', $relopts);
}
else {
process_entry_options($clonekey, ['skiplab','skipbiblist','uniquename=0','uniquelist=0']);
# Preserve options already in the clone but add 'dataonly'
$relclone->set_datafield('options', [ 'dataonly', @{$relclone->get_datafield('options') || []} ]);
}
$section->bibentries->add_entry($clonekey, $relclone);
$section->keytorelclone($relkey, $clonekey);
# Save graph information if requested
if (Biber::Config->getoption('output_format') eq 'dot') {
Biber::Config->set_graph('related', $clonekey, $relkey, $citekey);
}
# recurse so we can do cascading related entries
if ($logger->is_debug()) {# performance tune
$logger->debug("Recursing into RELATED entry '$clonekey'");
}
$relclone->relclone;
}
}
# point to clone keys and add to citekeys
# We have to add the citekeys as we need these clones in the .bbl
# but the dataonly will cause biblatex not to print them in the bib
$section->add_citekeys(@clonekeys);
$self->set_datafield('related', [ @clonekeys ]);
}
}
=head2 clone
Clone a Biber::Entry object and return a copy
Accepts optionally a key for the copy
=cut
sub clone {
my ($self, $newkey) = @_;
my $new = new Biber::Entry;
while (my ($k, $v) = each(%{$self->{datafields}})) {
$new->{datafields}{$k} = $v;
}
while (my ($k, $v) = each(%{$self->{origfields}})) {
$new->{origfields}{$k} = $v;
}
# Need to add entrytype and datatype
$new->{derivedfields}{entrytype} = $self->{derivedfields}{entrytype};
$new->{derivedfields}{datatype} = $self->{derivedfields}{datatype};
# put in key if specified
if ($newkey) {
$new->{derivedfields}{citekey} = $newkey;
}
# Record the key of the source of the clone in the clone. Useful for loop detection etc.
# in biblatex
$new->{derivedfields}{clonesourcekey} = $self->get_field('citekey');
return $new;
}
=head2 notnull
Test for an empty object
=cut
sub notnull {
my $self = shift;
my @arr = keys %$self;
return $#arr > -1 ? 1 : 0;
}
=head2 set_labelname_info
Record the labelname information. This is special
meta-information so we have a separate method for this
Takes a hash ref with the information.
=cut
sub set_labelname_info {
my ($self, $data) = @_;
$self->{labelnameinfo} = $data;
return;
}
=head2 get_labelname_info
Retrieve the labelname information. This is special
meta-information so we have a separate method for this
Returns a hash ref with the information.
=cut
sub get_labelname_info {
my $self = shift;
return $self->{labelnameinfo};
}
=head2 set_labelnamefh_info
Record the fullhash labelname information. This is special
meta-information so we have a separate method for this
Takes a hash ref with the information.
=cut
sub set_labelnamefh_info {
my ($self, $data) = @_;
$self->{labelnamefhinfo} = $data;
return;
}
=head2 get_labelnamefh_info
Retrieve the fullhash labelname information. This is special
meta-information so we have a separate method for this
Returns a hash ref with the information.
=cut
sub get_labelnamefh_info {
my $self = shift;
return $self->{labelnamefhinfo};
}
=head2 set_labeltitle_info
Record the labeltitle information. This is special
meta-information so we have a separate method for this
Takes a hash ref with the information.
=cut
sub set_labeltitle_info {
my ($self, $data) = @_;
$self->{labeltitleinfo} = $data;
return;
}
=head2 get_labeltitle_info
Retrieve the labeltitle information. This is special
meta-information so we have a separate method for this
Returns a hash ref with the information.
=cut
sub get_labeltitle_info {
my $self = shift;
return $self->{labeltitleinfo};
}
=head2 set_labeldate_info
Record the labeldate information. This is special
meta-information so we have a separate method for this
Takes a hash ref with the information.
=cut
sub set_labeldate_info {
my ($self, $data) = @_;
$self->{labeldateinfo} = $data;
return;
}
=head2 get_labeldate_info
Retrieve the labeldate information. This is special
meta-information so we have a separate method for this
Returns a hash ref with the information.
=cut
sub get_labeldate_info {
my $self = shift;
return $self->{labeldateinfo};
}
=head2 set_field
Set a derived field for a Biber::Entry object, that is, a field
which was not an actual bibliography field
=cut
sub set_field {
my ($self, $key, $val) = @_;
# All derived fields can be null
$self->{derivedfields}{$key} = $val;
return;
}
=head2 get_field
Get a field for a Biber::Entry object
Uses // as fields can be null (end dates etc).
=cut
sub get_field {
my ($self, $key) = @_;
return undef unless $key;
return $self->{datafields}{$key} //
$self->{derivedfields}{$key};
}
=head2 set_datafield
Set a field which is in the .bib data file
=cut
sub set_datafield {
my ($self, $key, $val) = @_;
$self->{datafields}{$key} = $val;
return;
}
=head2 get_datafield
Get a field that was in the original data file
=cut
sub get_datafield {
my ($self, $key) = @_;
return $self->{datafields}{$key};
}
=head2 del_field
Delete a field in a Biber::Entry object
=cut
sub del_field {
my ($self, $key) = @_;
delete $self->{datafields}{$key};
delete $self->{derivedfields}{$key};
return;
}
=head2 del_datafield
Delete an original data source data field in a Biber::Entry object
=cut
sub del_datafield {
my ($self, $key) = @_;
delete $self->{datafields}{$key};
return;
}
=head2 field_exists
Check whether a field exists (even if null)
=cut
sub field_exists {
my ($self, $key) = @_;
return (exists($self->{datafields}{$key}) ||
exists($self->{derivedfields}{$key})) ? 1 : 0;
}
=head2 date_fields_exist
Check whether any parts of a date field exist when passed a datepart field name
=cut
sub date_fields_exist {
my ($self, $field) = @_;
my $t = $field =~ s/(?:end)?(?:year|month|day|hour|minute|second|season|timezone)$//r;
foreach my $dp ('year', 'month', 'day', 'hour', 'minute', 'second', 'season', 'timezone') {
if (exists($self->{datafields}{"$t$dp"}) or exists($self->{datafields}{"${t}end$dp"})) {
return 1;
}
}
return 0;
}
=head2 datafields
Returns a sorted array of the fields which came from the data source
=cut
sub datafields {
my $self = shift;
use locale;
return sort keys %{$self->{datafields}};
}
=head2 count_datafields
Returns the number of datafields
=cut
sub count_datafields {
my $self = shift;
return keys %{$self->{datafields}};
}
=head2 derivedfields
Returns a sorted array of the fields which were added during processing
=cut
sub derivedfields {
my $self = shift;
use locale;
return sort keys %{$self->{derivedfields}};
}
=head2 fields
Returns a sorted array of all field names, including ones
added during processing which are not necessarily fields
which came from the data file
=cut
sub fields {
my $self = shift;
use locale;
my %keys = (%{$self->{derivedfields}}, %{$self->{datafields}});
return sort keys %keys;
}
=head2 count_fields
Returns the number of fields
=cut
sub count_fields {
my $self = shift;
my %keys = (%{$self->{derivedfields}}, %{$self->{datafields}});
return keys %keys;
}
=head2 has_keyword
Check if a Biber::Entry object has a particular keyword in
in the KEYWORDS field.
=cut
sub has_keyword {
no autovivification;
my $self = shift;
my $keyword = shift;
if (my $keywords = $self->{datafields}{keywords}) {
return (first {$_ eq $keyword} @$keywords) ? 1 : 0;
}
else {
return 0;
}
return undef; # shouldn't get here
}
=head2 add_warning
Append a warning to a Biber::Entry object
=cut
sub add_warning {
my ($self, $warning) = @_;
push $self->{derivedfields}{warnings}->@*, $warning;
return;
}
=head2 set_inherit_from
Inherit fields from first child entry
$entry->set_inherit_from($firstchild);
Takes a second Biber::Entry object as argument
The purpose here is to inherit fields so that sorting/labelling defaults
can be generated for set parents from the first child set member data, unless
the set parent itself already has some fields set that will do this. Set
parents only have certain fields output in the .bbl and those that output but
are not used in sorting/labelling data generation should not be inherited.
=cut
sub set_inherit_from {
my ($self, $parent) = @_;
my $dmh = Biber::Config->get_dm_helpers;
# Data source fields
foreach my $field ($parent->datafields) {
next if $self->field_exists($field); # Don't overwrite existing fields
# Annotations are allowed for set parents themselves so never inherit these.
# This can't be suppressed at .bbl writing as it is impossible to know there
# whether the field came from the parent or first child because inheritance
# is a low-level operation on datafields
next if fc($field) eq fc('annotation');
$self->set_datafield($field, $parent->get_field($field));
}
# Datesplit is a special non datafield and needs to be inherited for any
# validation checks which may occur later
foreach my $df ($dmh->{datefields}->@*) {
$df =~ s/date$//;
if (my $ds = $parent->get_field("${df}datesplit")) {
$self->set_field("${df}datesplit", $ds);
}
}
return;
}
=head2 resolve_xdata
Recursively resolve XDATA fields in an entry
$entry->resolve_xdata($xdata_entry);
=cut
sub resolve_xdata {
my ($self, $xdata) = @_;
my $secnum = $Biber::MASTER->get_current_section;
my $section = $Biber::MASTER->sections->get_section($secnum);
my $entry_key = $self->get_field('citekey');
foreach my $xdatum (@$xdata) {
unless (my $xdatum_entry = $section->bibentry($xdatum)) {
biber_warn("Entry '$entry_key' references XDATA entry '$xdatum' which does not exist in section $secnum");
next;
}
else {
# Skip xdata inheritance if we've already done it
# This will only ever be between two XDATA entrytypes since we
# always start at a non-XDATA entrytype, which we'll not look at again
# and recursion is always between XDATA entrytypes.
next if Biber::Config->get_inheritance('xdata', $xdatum, $entry_key);
# record the XDATA resolve between these entries to prevent loops
Biber::Config->set_inheritance('xdata', $xdatum, $entry_key);
# Detect XDATA loops
unless (Biber::Config->is_inheritance_path('xdata', $entry_key, $xdatum)) {
if (my $recurse_xdata = $xdatum_entry->get_field('xdata')) { # recurse
$xdatum_entry->resolve_xdata($recurse_xdata);
}
foreach my $field ($xdatum_entry->datafields()) { # set fields
next if $field eq 'ids'; # Never inherit aliases
$self->set_datafield($field, $xdatum_entry->get_field($field));
# Record graphing information if required
if (Biber::Config->getoption('output_format') eq 'dot') {
Biber::Config->set_graph('xdata', $xdatum_entry->get_field('citekey'), $entry_key, $field, $field);
}
if ($logger->is_debug()) { # performance tune
$logger->debug("Setting field '$field' in entry '$entry_key' via XDATA");
}
}
}
else {
biber_error("Circular XDATA inheritance between '$xdatum'<->'$entry_key'");
}
}
}
}
=head2 inherit_from
Inherit fields from parent entry (as indicated by the crossref field)
$entry->inherit_from($parententry);
Takes a second Biber::Entry object as argument
Uses the crossref inheritance specifications from the .bcf
=cut
sub inherit_from {
my ($self, $parent) = @_;
my $dmh = Biber::Config->get_dm_helpers;
my $secnum = $Biber::MASTER->get_current_section;
my $section = $Biber::MASTER->sections->get_section($secnum);
my $target_key = $self->get_field('citekey'); # target/child key
my $source_key = $parent->get_field('citekey'); # source/parent key
# record the inheritance between these entries to prevent loops and repeats.
Biber::Config->set_inheritance('crossref', $source_key, $target_key);
# Detect crossref loops
unless (Biber::Config->is_inheritance_path('crossref', $target_key, $source_key)) {
# cascading crossrefs
if (my $ppkey = $parent->get_field('crossref')) {
$parent->inherit_from($section->bibentry($ppkey));
}
}
else {
biber_error("Circular inheritance between '$source_key'<->'$target_key'");
}
my $type = $self->get_field('entrytype');
my $parenttype = $parent->get_field('entrytype');
my $inheritance = Biber::Config->getblxoption('inheritance');
my %processed;
# get defaults
my $defaults = $inheritance->{defaults};
# global defaults ...
my $inherit_all = $defaults->{inherit_all};
my $override_target = $defaults->{override_target};
my $dignore = $defaults->{ignore};
# override with type_pair specific defaults if they exist ...
foreach my $type_pair ($defaults->{type_pair}->@*) {
if (($type_pair->{source} eq '*' or $type_pair->{source} eq $parenttype) and
($type_pair->{target} eq '*' or $type_pair->{target} eq $type)) {
$inherit_all = $type_pair->{inherit_all} if $type_pair->{inherit_all};
$override_target = $type_pair->{override_target} if $type_pair->{override_target};
$dignore = $type_pair->{ignore} if defined($type_pair->{ignore});
}
}
# First process any fields that have special treatment
foreach my $inherit ($inheritance->{inherit}->@*) {
# Match for this combination of entry and crossref parent?
foreach my $type_pair ($inherit->{type_pair}->@*) {
if (($type_pair->{source} eq '*' or $type_pair->{source} eq $parenttype) and
($type_pair->{target} eq '*' or $type_pair->{target} eq $type)) {
foreach my $field ($inherit->{field}->@*) {
# Skip for fields in the per-entry noinerit datafield set
if (my $niset = Biber::Config->getblxoption('noinherit', undef, $target_key) and
exists($field->{target})) {
if (first {$field->{target} eq $_} $DATAFIELD_SETS{$niset}->@*) {
next;
}
}
next unless $parent->field_exists($field->{source});
$processed{$field->{source}} = 1;
# localise defaults according to field, if specified
my $field_override_target = $field->{override_target} // 'false';
# Skip this field if requested
if ($field->{skip}) {
$processed{$field->{source}} = 1;
}
# Set the field if it doesn't exist or override is requested
elsif (not $self->field_exists($field->{target}) or
$field_override_target eq 'true') {
if ($logger->is_debug()) {# performance tune
$logger->debug("Entry '$target_key' is inheriting field '" .
$field->{source}.
"' as '" .
$field->{target} .
"' from entry '$source_key'");
}
$self->set_datafield($field->{target}, $parent->get_field($field->{source}));
# Ignore uniqueness information tracking for this inheritance?
my $ignore = $inherit->{ignore} || $dignore;
Biber::Config->add_uniq_ignore($target_key, $field->{target}, $ignore);
# Record graphing information if required
if (Biber::Config->getoption('output_format') eq 'dot') {
Biber::Config->set_graph('crossref', $source_key, $target_key, $field->{source}, $field->{target});
}
}
}
}
}
}
# Now process the rest of the (original data only) fields, if necessary
if ($inherit_all eq 'true') {
my @fields = $parent->datafields;
# Special case - if the child has any Xdate datepart, don't inherit any Xdateparts
# from parent otherwise you can end up with rather broken dates in the child.
# Remove such fields before we start since it can't be done in the loop because
# as soon as one Xdatepart field has been inherited, no more will be.
my @filtered_fields;
foreach my $field (@fields) {
if (first {$_ eq $field} $dmh->{dateparts}->@*) {
next if $self->date_fields_exist($field);
}
push @filtered_fields, $field;
}
@fields = @filtered_fields;
foreach my $field (@fields) {
# Skip for fields in the per-entry noinherit datafield set
if (my $niset = Biber::Config->getblxoption('noinherit', undef, $target_key)) {
if (first {$field eq $_} $DATAFIELD_SETS{$niset}->@*) {
next;
}
}
next if $processed{$field}; # Skip if we have already dealt with this field above
# Set the field if it doesn't exist or override is requested
if (not $self->field_exists($field) or $override_target eq 'true') {
if ($logger->is_debug()) { # performance tune
$logger->debug("Entry '$target_key' is inheriting field '$field' from entry '$source_key'");
}
$self->set_datafield($field, $parent->get_field($field));
# Ignore uniqueness information tracking for this inheritance?
Biber::Config->add_uniq_ignore($target_key, $field, $dignore);
# Record graphing information if required
if (Biber::Config->getoption('output_format') eq 'dot') {
Biber::Config->set_graph('crossref', $source_key, $target_key, $field, $field);
}
}
}
}
# Datesplit is a special non datafield and needs to be inherited for any
# validation checks which may occur later
foreach my $df ($dmh->{datefields}->@*) {
$df =~ s/date$//;
if (my $ds = $parent->get_field("${df}datesplit")) {
$self->set_field("${df}datesplit", $ds);
}
}
return;
}
=head2 dump
Dump Biber::Entry object
=cut
sub dump {
my $self = shift;
return pp($self);
}
1;
__END__
=head1 AUTHORS
François Charette, C<< <firmicus at ankabut.net> >>
Philip Kime C<< <philip at kime.org.uk> >>
=head1 BUGS
Please report any bugs or feature requests on our Github tracker at
L<https://github.com/plk/biber/issues>.
=head1 COPYRIGHT & LICENSE
Copyright 2009-2017 François Charette and Philip Kime, all rights reserved.
This module is free software. You can redistribute it and/or
modify it under the terms of the Artistic License 2.0.
This program is distributed in the hope that it will be useful,
but without any warranty; without even the implied warranty of
merchantability or fitness for a particular purpose.
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