This file is indexed.

/usr/share/libavogadro/shaders/light.vert is in avogadro-data 1.2.0-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

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varying vec4 diffuse,ambient;
varying vec3 normal,lightDir,halfVector;

void main()
{
  /* first transform the normal into eye space and
     normalize the result */
  normal = normalize(gl_NormalMatrix * gl_Normal);

  /* now normalize the light's direction. Note that
     according to the OpenGL specification, the light
     is stored in eye space. Also since we're talking about
     a directional light, the position field is actually direction */
  lightDir = normalize(vec3(gl_LightSource[0].position));

  /* Normalize the halfVector to pass it to the fragment shader */
  halfVector = normalize(gl_LightSource[0].halfVector.xyz);

  /* Compute the diffuse, ambient and globalAmbient terms */
  diffuse = gl_FrontMaterial.diffuse * gl_LightSource[0].diffuse;
  ambient = gl_FrontMaterial.ambient * gl_LightSource[0].ambient;
  ambient += gl_LightModel.ambient * gl_FrontMaterial.ambient;

  gl_Position = ftransform();
}