/usr/share/avogadro/fragments/alkenes/Z-hept-2-ene.cml is in avogadro-data 1.2.0-3.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 | <?xml version="1.0" encoding="UTF-8"?>
<molecule xmlns="http://www.xml-cml.org/schema"
xmlns:cml="http://www.xml-cml.org/dict/cml"
xmlns:units="http://www.xml-cml.org/units/units"
xmlns:xsd="http://www.w3c.org/2001/XMLSchema"
xmlns:iupac="http://www.iupac.org"
id="CS_Z-hept-2-ene">
<formula concise=" C 7 H 14 "/>
<identifier convention="iupac:inchi" value="1/C7H14/c1-3-5-7-6-4-2/h3,5H,4,6-7H2,1-2H3/b5-3-"/>
<name convention="IUPAC">(Z)-Hept-2-ene</name>
<atomArray>
<atom id="a1" elementType="H" x3="-0.883102" y3="0.102457" z3="2.077625"/>
<atom id="a2" elementType="C" x3="-1.339063" y3="0.023298" z3="1.082498"/>
<atom id="a3" elementType="C" x3="-0.397893" y3="-0.004077" z3="-0.068474"/>
<atom id="a4" elementType="C" x3="-2.667998" y3="-0.041544" z3="0.978137"/>
<atom id="a5" elementType="H" x3="-3.279923" y3="-0.017684" z3="1.888406"/>
<atom id="a6" elementType="C" x3="-3.426072" y3="-0.155391" z3="-0.286008"/>
<atom id="a7" elementType="H" x3="-0.566333" y3="-0.923515" z3="-0.666426"/>
<atom id="a8" elementType="C" x3="1.054013" y3="0.061784" z3="0.381576"/>
<atom id="a9" elementType="H" x3="-0.619369" y3="0.842042" z3="-0.751904"/>
<atom id="a10" elementType="H" x3="-3.874587" y3="-1.154730" z3="-0.371000"/>
<atom id="a11" elementType="H" x3="-2.807133" y3="0.005534" z3="-1.179096"/>
<atom id="a12" elementType="H" x3="-4.243087" y3="0.577804" z3="-0.315533"/>
<atom id="a13" elementType="H" x3="1.225586" y3="0.979823" z3="0.978777"/>
<atom id="a14" elementType="C" x3="2.001525" y3="0.033023" z3="-0.807171"/>
<atom id="a15" elementType="H" x3="1.278960" y3="-0.782420" z3="1.063823"/>
<atom id="a16" elementType="C" x3="3.445929" y3="0.102436" z3="-0.365661"/>
<atom id="a17" elementType="H" x3="1.773975" y3="0.874984" z3="-1.490995"/>
<atom id="a18" elementType="H" x3="1.831567" y3="-0.886408" z3="-1.402172"/>
<atom id="a19" elementType="H" x3="4.126835" y3="0.082634" z3="-1.226068"/>
<atom id="a20" elementType="H" x3="3.712166" y3="-0.742646" z3="0.283139"/>
<atom id="a21" elementType="H" x3="3.654004" y3="1.022596" z3="0.196526"/>
</atomArray>
<bondArray>
<bond atomRefs2="a1 a2" order="1"/>
<bond atomRefs2="a2 a3" order="1"/>
<bond atomRefs2="a2 a4" order="2"/>
<bond atomRefs2="a4 a5" order="1"/>
<bond atomRefs2="a4 a6" order="1"/>
<bond atomRefs2="a3 a7" order="1"/>
<bond atomRefs2="a3 a8" order="1"/>
<bond atomRefs2="a3 a9" order="1"/>
<bond atomRefs2="a6 a10" order="1"/>
<bond atomRefs2="a6 a11" order="1"/>
<bond atomRefs2="a6 a12" order="1"/>
<bond atomRefs2="a8 a13" order="1"/>
<bond atomRefs2="a8 a14" order="1"/>
<bond atomRefs2="a8 a15" order="1"/>
<bond atomRefs2="a14 a16" order="1"/>
<bond atomRefs2="a14 a17" order="1"/>
<bond atomRefs2="a14 a18" order="1"/>
<bond atomRefs2="a16 a19" order="1"/>
<bond atomRefs2="a16 a20" order="1"/>
<bond atomRefs2="a16 a21" order="1"/>
</bondArray>
<propertyList>
<property dictRef="cml:molwt" title="Molecular weight">
<scalar dataType="xsd:double" dictRef="cml:molwt" units="units:g">98.1861</scalar>
</property>
<property dictRef="cml:monoisotopicwt" title="Monoisotopic weight">
<scalar dataType="xsd:double" dictRef="cml:monoisotopicwt" units="units:g">98.1095504</scalar>
</property>
<property dictRef="cml:bp" title="Boiling point">
<scalar dataType="xsd:double" errorValue="1.0" dictRef="cml:bp" units="units:celsius">98</scalar>
</property>
</propertyList>
</molecule>
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