/usr/share/avogadro/fragments/alkenes/Z-but-2-ene.cml is in avogadro-data 1.2.0-3.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 | <?xml version="1.0" encoding="UTF-8"?>
<molecule xmlns="http://www.xml-cml.org/schema"
xmlns:cml="http://www.xml-cml.org/dict/cml"
xmlns:units="http://www.xml-cml.org/units/units"
xmlns:xsd="http://www.w3c.org/2001/XMLSchema"
xmlns:iupac="http://www.iupac.org"
id="CS_Z-but-2-ene">
<formula concise=" C 4 H 8 "/>
<identifier convention="iupac:inchi" value="1/C4H8/c1-3-4-2/h3-4H,1-2H3/b4-3-"/>
<name convention="IUPAC">(Z)-But-2-ene</name>
<atomArray>
<atom id="a1" elementType="H" x3="-0.201488" y3="-2.132000" z3="0.093891"/>
<atom id="a2" elementType="C" x3="-0.186536" y3="-1.036574" z3="0.047224"/>
<atom id="a3" elementType="C" x3="0.979863" y3="-0.389149" z3="0.000925"/>
<atom id="a4" elementType="H" x3="1.918996" y3="-0.955106" z3="0.009767"/>
<atom id="a5" elementType="C" x3="1.119540" y3="1.081947" z3="-0.063888"/>
<atom id="a6" elementType="H" x3="1.655504" y3="1.380688" z3="-0.974187"/>
<atom id="a7" elementType="H" x3="1.689502" y3="1.455802" z3="0.796670"/>
<atom id="a8" elementType="H" x3="0.141186" y3="1.591163" z3="-0.066801"/>
<atom id="a9" elementType="C" x3="-1.511051" y3="-0.378177" z3="0.040392"/>
<atom id="a10" elementType="H" x3="-1.427232" y3="0.720652" z3="-0.004398"/>
<atom id="a11" elementType="H" x3="-2.076462" y3="-0.634587" z3="0.945743"/>
<atom id="a12" elementType="H" x3="-2.101823" y3="-0.704660" z3="-0.825337"/>
</atomArray>
<bondArray>
<bond atomRefs2="a1 a2" order="1"/>
<bond atomRefs2="a2 a3" order="2"/>
<bond atomRefs2="a2 a9" order="1"/>
<bond atomRefs2="a3 a4" order="1"/>
<bond atomRefs2="a3 a5" order="1"/>
<bond atomRefs2="a5 a6" order="1"/>
<bond atomRefs2="a5 a7" order="1"/>
<bond atomRefs2="a5 a8" order="1"/>
<bond atomRefs2="a9 a10" order="1"/>
<bond atomRefs2="a9 a11" order="1"/>
<bond atomRefs2="a9 a12" order="1"/>
</bondArray>
<propertyList>
<property dictRef="cml:molwt" title="Molecular weight">
<scalar dataType="xsd:double" dictRef="cml:molwt" units="units:g">56.1063</scalar>
</property>
<property dictRef="cml:monoisotopicwt" title="Monoisotopic weight">
<scalar dataType="xsd:double" dictRef="cml:monoisotopicwt" units="units:g">56.0626003</scalar>
</property>
<property dictRef="cml:mp" title="Melting point">
<scalar dataType="xsd:double" errorValue="1.0" dictRef="cml:mp" units="units:celsius">-139</scalar>
</property>
<property dictRef="cml:bp" title="Boiling point">
<scalar dataType="xsd:double" errorValue="1.0" dictRef="cml:bp" units="units:celsius">4</scalar>
</property>
</propertyList>
</molecule>
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