/usr/lib/python2.7/dist-packages/networkx/algorithms/centrality/eigenvector.py is in python-networkx 1.11-1ubuntu2.
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"""
Eigenvector centrality.
"""
# Copyright (C) 2004-2015 by
# Aric Hagberg <hagberg@lanl.gov>
# Dan Schult <dschult@colgate.edu>
# Pieter Swart <swart@lanl.gov>
# All rights reserved.
# BSD license.
import networkx as nx
__author__ = "\n".join(['Aric Hagberg (aric.hagberg@gmail.com)',
'Pieter Swart (swart@lanl.gov)',
'Sasha Gutfraind (ag362@cornell.edu)'])
__all__ = ['eigenvector_centrality',
'eigenvector_centrality_numpy']
def eigenvector_centrality(G, max_iter=100, tol=1.0e-6, nstart=None,
weight='weight'):
"""Compute the eigenvector centrality for the graph G.
Eigenvector centrality computes the centrality for a node based on the
centrality of its neighbors. The eigenvector centrality for node `i` is
.. math::
\mathbf{Ax} = \lambda \mathbf{x}
where `A` is the adjacency matrix of the graph G with eigenvalue `\lambda`.
By virtue of the Perron–Frobenius theorem, there is a unique and positive
solution if `\lambda` is the largest eigenvalue associated with the
eigenvector of the adjacency matrix `A` ([2]_).
Parameters
----------
G : graph
A networkx graph
max_iter : integer, optional
Maximum number of iterations in power method.
tol : float, optional
Error tolerance used to check convergence in power method iteration.
nstart : dictionary, optional
Starting value of eigenvector iteration for each node.
weight : None or string, optional
If None, all edge weights are considered equal.
Otherwise holds the name of the edge attribute used as weight.
Returns
-------
nodes : dictionary
Dictionary of nodes with eigenvector centrality as the value.
Examples
--------
>>> G = nx.path_graph(4)
>>> centrality = nx.eigenvector_centrality(G)
>>> print(['%s %0.2f'%(node,centrality[node]) for node in centrality])
['0 0.37', '1 0.60', '2 0.60', '3 0.37']
See Also
--------
eigenvector_centrality_numpy
pagerank
hits
Notes
-----
The measure was introduced by [1]_.
The eigenvector calculation is done by the power iteration method and has
no guarantee of convergence. The iteration will stop after ``max_iter``
iterations or an error tolerance of ``number_of_nodes(G)*tol`` has been
reached.
For directed graphs this is "left" eigenvector centrality which corresponds
to the in-edges in the graph. For out-edges eigenvector centrality
first reverse the graph with ``G.reverse()``.
References
----------
.. [1] Phillip Bonacich:
Power and Centrality: A Family of Measures.
American Journal of Sociology 92(5):1170–1182, 1986
http://www.leonidzhukov.net/hse/2014/socialnetworks/papers/Bonacich-Centrality.pdf
.. [2] Mark E. J. Newman:
Networks: An Introduction.
Oxford University Press, USA, 2010, pp. 169.
"""
from math import sqrt
if type(G) == nx.MultiGraph or type(G) == nx.MultiDiGraph:
raise nx.NetworkXException("Not defined for multigraphs.")
if len(G) == 0:
raise nx.NetworkXException("Empty graph.")
if nstart is None:
# choose starting vector with entries of 1/len(G)
x = dict([(n,1.0/len(G)) for n in G])
else:
x = nstart
# normalize starting vector
s = 1.0/sum(x.values())
for k in x:
x[k] *= s
nnodes = G.number_of_nodes()
# make up to max_iter iterations
for i in range(max_iter):
xlast = x
x = dict.fromkeys(xlast, 0)
# do the multiplication y^T = x^T A
for n in x:
for nbr in G[n]:
x[nbr] += xlast[n] * G[n][nbr].get(weight, 1)
# normalize vector
try:
s = 1.0/sqrt(sum(v**2 for v in x.values()))
# this should never be zero?
except ZeroDivisionError:
s = 1.0
for n in x:
x[n] *= s
# check convergence
err = sum([abs(x[n]-xlast[n]) for n in x])
if err < nnodes*tol:
return x
raise nx.NetworkXError("""eigenvector_centrality():
power iteration failed to converge in %d iterations."%(i+1))""")
def eigenvector_centrality_numpy(G, weight='weight'):
"""Compute the eigenvector centrality for the graph G.
Eigenvector centrality computes the centrality for a node based on the
centrality of its neighbors. The eigenvector centrality for node `i` is
.. math::
\mathbf{Ax} = \lambda \mathbf{x}
where `A` is the adjacency matrix of the graph G with eigenvalue `\lambda`.
By virtue of the Perron–Frobenius theorem, there is a unique and positive
solution if `\lambda` is the largest eigenvalue associated with the
eigenvector of the adjacency matrix `A` ([2]_).
Parameters
----------
G : graph
A networkx graph
weight : None or string, optional
The name of the edge attribute used as weight.
If None, all edge weights are considered equal.
Returns
-------
nodes : dictionary
Dictionary of nodes with eigenvector centrality as the value.
Examples
--------
>>> G = nx.path_graph(4)
>>> centrality = nx.eigenvector_centrality_numpy(G)
>>> print(['%s %0.2f'%(node,centrality[node]) for node in centrality])
['0 0.37', '1 0.60', '2 0.60', '3 0.37']
See Also
--------
eigenvector_centrality
pagerank
hits
Notes
-----
The measure was introduced by [1]_.
This algorithm uses the SciPy sparse eigenvalue solver (ARPACK) to
find the largest eigenvalue/eigenvector pair.
For directed graphs this is "left" eigenvector centrality which corresponds
to the in-edges in the graph. For out-edges eigenvector centrality
first reverse the graph with G.reverse().
References
----------
.. [1] Phillip Bonacich:
Power and Centrality: A Family of Measures.
American Journal of Sociology 92(5):1170–1182, 1986
http://www.leonidzhukov.net/hse/2014/socialnetworks/papers/Bonacich-Centrality.pdf
.. [2] Mark E. J. Newman:
Networks: An Introduction.
Oxford University Press, USA, 2010, pp. 169.
"""
import scipy as sp
from scipy.sparse import linalg
if len(G) == 0:
raise nx.NetworkXException('Empty graph.')
M = nx.to_scipy_sparse_matrix(G, nodelist=G.nodes(), weight=weight,
dtype=float)
eigenvalue, eigenvector = linalg.eigs(M.T, k=1, which='LR')
largest = eigenvector.flatten().real
norm = sp.sign(largest.sum())*sp.linalg.norm(largest)
centrality = dict(zip(G,map(float,largest/norm)))
return centrality
# fixture for nose tests
def setup_module(module):
from nose import SkipTest
try:
import scipy
except:
raise SkipTest("SciPy not available")
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