This package is 456.5 KB.
It is available at http://ftp.debian.org/debian/pool/main/b/bioperl/bioperl_1.6.901-3_all.deb
.
View its full control file here:
debian/control.
Perl tools for computational molecular biology
This package depends on:
libbio-perl-perl (= 1.6.901-3), perl.
This package recommends:
bioperl-run (>= 1.6.0), perl-doc, libhttp-message-perl, libwww-perl, libcache-cache-perl, libbio-perl-run-perl, libdbi-perl, libgd-gd2-perl, libapache-dbi-perl, liburi-perl, libxml-simple-perl, libyaml-perl, libace-perl, liblist-moreutils-perl, libxml-twig-perl, libset-scalar-perl.
This package suggests:
groff-base.
This package does not conflict with any other package.
bioperl 1.6.901-3 is in debian - wheezy / main. This package's architecture is: architectureless.
| File | Mime Type | Owner | Mode | Size |
|---|---|---|---|---|
/usr/
|
root:root | 0o755 | ||
/usr/bin/
|
root:root | 0o755 | ||
/usr/bin/bp_aacomp
|
text/x-perl | root:root | 0o755 | 2.8 KB |
/usr/bin/bp_biblio
|
text/x-perl | root:root | 0o755 | 15.0 KB |
/usr/bin/bp_biofetch_genbank_proxy
|
text/x-perl | root:root | 0o755 | 8.1 KB |
/usr/bin/bp_bioflat_index
|
text/x-perl | root:root | 0o755 | 3.6 KB |
/usr/bin/bp_biogetseq
|
text/x-perl | root:root | 0o755 | 1.5 KB |
/usr/bin/bp_blast2tree
|
text/x-perl | root:root | 0o755 | 4.6 KB |
/usr/bin/bp_bulk_load_gff
|
text/x-perl | root:root | 0o755 | 20.5 KB |
/usr/bin/bp_chaos_plot
|
text/x-perl | root:root | 0o755 | 4.2 KB |
/usr/bin/bp_classify_hits_kingdom
|
text/x-perl | root:root | 0o755 | 6.2 KB |
/usr/bin/bp_composite_LD
|
text/x-perl | root:root | 0o755 | 2.6 KB |
/usr/bin/bp_das_server
|
text/x-perl | root:root | 0o755 | 14.6 KB |
/usr/bin/bp_dbsplit
|
text/x-perl | root:root | 0o755 | 2.7 KB |
/usr/bin/bp_download_query_genbank
|
text/x-perl | root:root | 0o755 | 3.0 KB |
/usr/bin/bp_einfo
|
text/x-perl | root:root | 0o755 | 3.0 KB |
/usr/bin/bp_extract_feature_seq
|
text/x-perl | root:root | 0o755 | 2.1 KB |
/usr/bin/bp_fastam9_to_table
|
text/x-perl | root:root | 0o755 | 3.9 KB |
/usr/bin/bp_fast_load_gff
|
text/x-perl | root:root | 0o755 | 15.3 KB |
/usr/bin/bp_fetch
|
text/x-perl | root:root | 0o755 | 8.5 KB |
/usr/bin/bp_filter_search
|
text/x-perl | root:root | 0o755 | 1.7 KB |
/usr/bin/bp_flanks
|
text/x-perl | root:root | 0o755 | 9.2 KB |
/usr/bin/bp_gccalc
|
text/x-perl | root:root | 0o755 | 3.3 KB |
/usr/bin/bp_genbank2gff
|
text/x-perl | root:root | 0o755 | 10.1 KB |
/usr/bin/bp_genbank2gff3
|
text/x-perl | root:root | 0o755 | 70.0 KB |
/usr/bin/bp_generate_histogram
|
text/x-perl | root:root | 0o755 | 3.6 KB |
/usr/bin/bp_heterogeneity_test
|
text/x-perl | root:root | 0o755 | 4.6 KB |
/usr/bin/bp_hivq
|
text/x-perl | root:root | 0o755 | 14.9 KB |
/usr/bin/bp_hmmer_to_table
|
text/x-perl | root:root | 0o755 | 2.7 KB |
/usr/bin/bp_index
|
text/x-perl | root:root | 0o755 | 5.2 KB |
/usr/bin/bp_load_gff
|
text/x-perl | root:root | 0o755 | 6.1 KB |
/usr/bin/bp_local_taxonomydb_query
|
text/x-perl | root:root | 0o755 | 1.8 KB |
/usr/bin/bp_make_mrna_protein
|
text/x-perl | root:root | 0o755 | 3.1 KB |
/usr/bin/bp_mask_by_search
|
text/x-perl | root:root | 0o755 | 4.8 KB |
/usr/bin/bp_meta_gff
|
text/x-perl | root:root | 0o755 | 2.2 KB |
/usr/bin/bp_mrtrans
|
text/x-perl | root:root | 0o755 | 3.0 KB |
/usr/bin/bp_mutate
|
text/x-perl | root:root | 0o755 | 4.0 KB |
/usr/bin/bp_netinstall
|
text/x-perl | root:root | 0o755 | 13.3 KB |
/usr/bin/bp_nexus2nh
|
text/x-perl | root:root | 0o755 | 894 bytes |
/usr/bin/bp_nrdb
|
text/x-perl | root:root | 0o755 | 3.4 KB |
/usr/bin/bp_oligo_count
|
text/x-perl | root:root | 0o755 | 6.1 KB |
/usr/bin/bp_pairwise_kaks
|
text/x-perl | root:root | 0o755 | 5.9 KB |
/usr/bin/bp_parse_hmmsearch
|
text/x-perl | root:root | 0o755 | 6.4 KB |
/usr/bin/bp_process_gadfly
|
text/x-perl | root:root | 0o755 | 7.0 KB |
/usr/bin/bp_process_sgd
|
text/x-perl | root:root | 0o755 | 3.6 KB |
/usr/bin/bp_process_wormbase
|
text/x-perl | root:root | 0o755 | 7.6 KB |
/usr/bin/bp_query_entrez_taxa
|
text/x-perl | root:root | 0o755 | 2.7 KB |
/usr/bin/bp_remote_blast
|
text/x-perl | root:root | 0o755 | 4.8 KB |
/usr/bin/bp_revtrans-motif
|
text/x-perl | root:root | 0o755 | 23.8 KB |
/usr/bin/bp_search2alnblocks
|
text/x-perl | root:root | 0o755 | 4.1 KB |
/usr/bin/bp_search2BSML
|
text/x-perl | root:root | 0o755 | 1.9 KB |
/usr/bin/bp_search2gff
|
text/x-perl | root:root | 0o755 | 11.4 KB |
/usr/bin/bp_search2table
|
text/x-perl | root:root | 0o755 | 2.4 KB |
/usr/bin/bp_search2tribe
|
text/x-perl | root:root | 0o755 | 2.6 KB |
/usr/bin/bp_seqconvert
|
text/x-perl | root:root | 0o755 | 2.2 KB |
/usr/bin/bp_seqfeature_delete
|
text/x-perl | root:root | 0o755 | 4.6 KB |
/usr/bin/bp_seqfeature_gff3
|
text/x-perl | root:root | 0o755 | 2.3 KB |
/usr/bin/bp_seqfeature_load
|
text/x-perl | root:root | 0o755 | 6.4 KB |
/usr/bin/bp_seq_length
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text/x-perl | root:root | 0o755 | 1.7 KB |
/usr/bin/bp_seqret
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text/x-perl | root:root | 0o755 | 2.3 KB |
/usr/bin/bp_seqretsplit
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text/x-perl | root:root | 0o755 | 1.5 KB |
/usr/bin/bp_split_seq
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text/x-perl | root:root | 0o755 | 4.2 KB |
/usr/bin/bp_sreformat
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text/x-perl | root:root | 0o755 | 5.7 KB |
/usr/bin/bp_taxid4species
|
text/x-perl | root:root | 0o755 | 2.4 KB |
/usr/bin/bp_taxonomy2tree
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text/x-perl | root:root | 0o755 | 2.6 KB |
/usr/bin/bp_translate_seq
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text/x-perl | root:root | 0o755 | 1.4 KB |
/usr/bin/bp_tree2pag
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text/x-perl | root:root | 0o755 | 1.4 KB |
/usr/bin/bp_unflatten_seq
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text/x-perl | root:root | 0o755 | 7.3 KB |
/usr/share/
|
root:root | 0o755 | ||
/usr/share/doc/
|
root:root | 0o755 | ||
/usr/share/doc/bioperl/
|
root:root | 0o755 | ||
/usr/share/doc/bioperl/AUTHORS.gz
|
application/gzip | root:root | 0o644 | 2.6 KB |
/usr/share/doc/bioperl/BUGS.gz
|
application/gzip | root:root | 0o644 | 2.5 KB |
/usr/share/doc/bioperl/changelog.Debian.gz
|
application/gzip | root:root | 0o644 | 3.8 KB |
/usr/share/doc/bioperl/changelog.gz
|
application/gzip | root:root | 0o644 | 22.9 KB |
/usr/share/doc/bioperl/copyright
|
text/plain | root:root | 0o644 | 10.4 KB |
/usr/share/doc/bioperl/DEPRECATED
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text/plain | root:root | 0o644 | 3.1 KB |
/usr/share/doc/bioperl/examples/
|
root:root | 0o755 | ||
/usr/share/doc/bioperl/examples/align/
|
root:root | 0o755 | ||
/usr/share/doc/bioperl/examples/align/align_on_codons.pl.gz
|
application/gzip | root:root | 0o644 | 1.9 KB |
/usr/share/doc/bioperl/examples/align/aligntutorial.pl
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text/x-perl | root:root | 0o755 | 3.4 KB |
/usr/share/doc/bioperl/examples/align/clustalw.pl.gz
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application/gzip | root:root | 0o644 | 3.2 KB |
/usr/share/doc/bioperl/examples/align/simplealign.pl.gz
|
application/gzip | root:root | 0o644 | 6.6 KB |
/usr/share/doc/bioperl/examples/biblio/
|
root:root | 0o755 | ||
/usr/share/doc/bioperl/examples/biblio/biblio-eutils-example.pl.gz
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application/gzip | root:root | 0o644 | 2.7 KB |
/usr/share/doc/bioperl/examples/biblio/biblio-soap-example.pl.gz
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application/gzip | root:root | 0o644 | 2.5 KB |
/usr/share/doc/bioperl/examples/biblio/biblio_soap.pl
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text/x-perl | root:root | 0o755 | 3.1 KB |
/usr/share/doc/bioperl/examples/Bio-DB-GFF/
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root:root | 0o755 | ||
/usr/share/doc/bioperl/examples/Bio-DB-GFF/load_ucsc.pl.gz
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application/gzip | root:root | 0o644 | 3.0 KB |
/usr/share/doc/bioperl/examples/bioperl.pl.gz
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application/gzip | root:root | 0o644 | 4.4 KB |
/usr/share/doc/bioperl/examples/cluster/
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root:root | 0o755 | ||
/usr/share/doc/bioperl/examples/cluster/dbsnp.pl
|
text/x-perl | root:root | 0o755 | 558 bytes |
/usr/share/doc/bioperl/examples/contributed/
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root:root | 0o755 | ||
/usr/share/doc/bioperl/examples/contributed/nmrpdb_parse.pl.gz
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application/gzip | root:root | 0o644 | 1.8 KB |
/usr/share/doc/bioperl/examples/contributed/prosite2perl.pl
|
text/x-perl | root:root | 0o755 | 644 bytes |
/usr/share/doc/bioperl/examples/contributed/rebase2list.pl
|
text/x-perl | root:root | 0o755 | 518 bytes |
/usr/share/doc/bioperl/examples/db/
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root:root | 0o755 | ||
/usr/share/doc/bioperl/examples/db/dbfetch.gz
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application/gzip | root:root | 0o644 | 6.3 KB |
/usr/share/doc/bioperl/examples/db/est_tissue_query.pl.gz
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application/gzip | root:root | 0o644 | 2.1 KB |
/usr/share/doc/bioperl/examples/db/gb2features.pl.gz
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application/gzip | root:root | 0o644 | 998 bytes |
/usr/share/doc/bioperl/examples/db/getGenBank.pl
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text/x-perl | root:root | 0o755 | 789 bytes |
/usr/share/doc/bioperl/examples/db/get_seqs.pl
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text/x-perl | root:root | 0o755 | 1.6 KB |
/usr/share/doc/bioperl/examples/db/rfetch.pl
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text/x-perl | root:root | 0o755 | 1.2 KB |
/usr/share/doc/bioperl/examples/db/use_registry.pl
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text/x-perl | root:root | 0o755 | 314 bytes |
/usr/share/doc/bioperl/examples/generate_random_seq.pl
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text/x-perl | root:root | 0o755 | 2.4 KB |
/usr/share/doc/bioperl/examples/liveseq/
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root:root | 0o755 | ||
/usr/share/doc/bioperl/examples/liveseq/change_gene.pl
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text/x-perl | root:root | 0o755 | 1.8 KB |
/usr/share/doc/bioperl/examples/longorf.pl.gz
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application/gzip | root:root | 0o644 | 1.6 KB |
/usr/share/doc/bioperl/examples/make_primers.pl.gz
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application/gzip | root:root | 0o644 | 1.8 KB |
/usr/share/doc/bioperl/examples/popgen/
|
root:root | 0o755 | ||
/usr/share/doc/bioperl/examples/popgen/parse_calc_stats.pl
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text/x-perl | root:root | 0o755 | 3.2 KB |
/usr/share/doc/bioperl/examples/quality/
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root:root | 0o755 | ||
/usr/share/doc/bioperl/examples/quality/svgtrace.pl
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text/x-perl | root:root | 0o755 | 1.5 KB |
/usr/share/doc/bioperl/examples/rev_and_trans.pl
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text/x-perl | root:root | 0o755 | 1.1 KB |
/usr/share/doc/bioperl/examples/revcom_dir.pl
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text/x-perl | root:root | 0o755 | 2.2 KB |
/usr/share/doc/bioperl/examples/root/
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root:root | 0o755 | ||
/usr/share/doc/bioperl/examples/root/exceptions1.pl.gz
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application/gzip | root:root | 0o644 | 1.6 KB |
/usr/share/doc/bioperl/examples/root/exceptions2.pl.gz
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application/gzip | root:root | 0o644 | 1.5 KB |
/usr/share/doc/bioperl/examples/root/exceptions3.pl
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text/x-perl | root:root | 0o755 | 1.3 KB |
/usr/share/doc/bioperl/examples/root/exceptions4.pl
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text/x-perl | root:root | 0o755 | 3.3 KB |
/usr/share/doc/bioperl/examples/root/lib/
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root:root | 0o755 | ||
/usr/share/doc/bioperl/examples/root/lib/TestInterface.pm
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text/plain | root:root | 0o644 | 491 bytes |
/usr/share/doc/bioperl/examples/root/lib/TestObject.pm
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text/plain | root:root | 0o644 | 1.7 KB |
/usr/share/doc/bioperl/examples/root/README.gz
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application/gzip | root:root | 0o644 | 2.9 KB |
/usr/share/doc/bioperl/examples/searchio/
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root:root | 0o755 | ||
/usr/share/doc/bioperl/examples/searchio/blast_example.pl.gz
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application/gzip | root:root | 0o644 | 1.5 KB |
/usr/share/doc/bioperl/examples/searchio/custom_writer.pl
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text/x-perl | root:root | 0o755 | 3.1 KB |
/usr/share/doc/bioperl/examples/searchio/hitwriter.pl
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text/x-perl | root:root | 0o755 | 4.0 KB |
/usr/share/doc/bioperl/examples/searchio/hspwriter.pl
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text/x-perl | root:root | 0o755 | 3.1 KB |
/usr/share/doc/bioperl/examples/searchio/htmlwriter.pl
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text/x-perl | root:root | 0o755 | 1.9 KB |
/usr/share/doc/bioperl/examples/searchio/psiblast_features.pl
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text/x-perl | root:root | 0o755 | 1.6 KB |
/usr/share/doc/bioperl/examples/searchio/psiblast_iterations.pl
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text/x-perl | root:root | 0o755 | 2.2 KB |
/usr/share/doc/bioperl/examples/searchio/rawwriter.pl
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text/x-perl | root:root | 0o755 | 1.9 KB |
/usr/share/doc/bioperl/examples/searchio/resultwriter.pl
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text/x-perl | root:root | 0o755 | 3.7 KB |
/usr/share/doc/bioperl/examples/searchio/waba2gff3.pl.gz
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application/gzip | root:root | 0o644 | 1.9 KB |
/usr/share/doc/bioperl/examples/searchio/waba2gff.pl
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text/x-perl | root:root | 0o755 | 779 bytes |
/usr/share/doc/bioperl/examples/sirna/
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root:root | 0o755 | ||
/usr/share/doc/bioperl/examples/sirna/rnai_finder.cgi.gz
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application/gzip | root:root | 0o644 | 5.3 KB |
/usr/share/doc/bioperl/examples/sirna/TAG
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text/plain | root:root | 0o644 | 73 bytes |
/usr/share/doc/bioperl/examples/structure/
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root:root | 0o755 | ||
/usr/share/doc/bioperl/examples/structure/structure-io.pl
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text/x-perl | root:root | 0o755 | 695 bytes |
/usr/share/doc/bioperl/examples/subsequence.cgi.gz
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application/gzip | root:root | 0o644 | 1.8 KB |
/usr/share/doc/bioperl/examples/tk/
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root:root | 0o755 | ||
/usr/share/doc/bioperl/examples/tk/gsequence.pl.gz
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application/gzip | root:root | 0o644 | 8.9 KB |
/usr/share/doc/bioperl/examples/tk/hitdisplay.pl
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text/x-perl | root:root | 0o755 | 3.3 KB |
/usr/share/doc/bioperl/examples/tools/
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root:root | 0o755 | ||
/usr/share/doc/bioperl/examples/tools/extract_genes.pl
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text/x-perl | root:root | 0o755 | 3.3 KB |
/usr/share/doc/bioperl/examples/tools/gb_to_gff.pl
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text/x-perl | root:root | 0o755 | 608 bytes |
/usr/share/doc/bioperl/examples/tools/gff2ps.pl.gz
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application/gzip | root:root | 0o644 | 2.3 KB |
/usr/share/doc/bioperl/examples/tools/parse_codeml.pl
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text/x-perl | root:root | 0o755 | 1.2 KB |
/usr/share/doc/bioperl/examples/tools/psw.pl
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text/x-perl | root:root | 0o755 | 3.2 KB |
/usr/share/doc/bioperl/examples/tools/reverse-translate.pl
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text/x-perl | root:root | 0o755 | 1.3 KB |
/usr/share/doc/bioperl/examples/tools/run_genscan.pl
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text/x-perl | root:root | 0o755 | 2.3 KB |
/usr/share/doc/bioperl/examples/tools/run_primer3.pl
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text/x-perl | root:root | 0o755 | 2.3 KB |
/usr/share/doc/bioperl/examples/tools/seq_pattern.pl
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text/x-perl | root:root | 0o755 | 3.9 KB |
/usr/share/doc/bioperl/examples/tools/standaloneblast.pl.gz
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application/gzip | root:root | 0o644 | 5.0 KB |
/usr/share/doc/bioperl/examples/tree/
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root:root | 0o755 | ||
/usr/share/doc/bioperl/examples/tree/paup2phylip.pl
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text/x-perl | root:root | 0o755 | 526 bytes |
/usr/share/doc/bioperl/README.gz
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application/gzip | root:root | 0o644 | 5.0 KB |
/usr/share/man/
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root:root | 0o755 | ||
/usr/share/man/man1/
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root:root | 0o755 | ||
/usr/share/man/man1/bp_aacomp.1p.gz
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application/gzip | root:root | 0o644 | 2.3 KB |
/usr/share/man/man1/bp_biblio.1p.gz
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application/gzip | root:root | 0o644 | 4.3 KB |
/usr/share/man/man1/bp_biofetch_genbank_proxy.1p.gz
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application/gzip | root:root | 0o644 | 3.1 KB |
/usr/share/man/man1/bp_bioflat_index.1p.gz
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application/gzip | root:root | 0o644 | 2.3 KB |
/usr/share/man/man1/bp_biogetseq.1p.gz
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application/gzip | root:root | 0o644 | 1.9 KB |
/usr/share/man/man1/bp_blast2tree.1p.gz
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application/gzip | root:root | 0o644 | 1.8 KB |
/usr/share/man/man1/bp_bulk_load_gff.1p.gz
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application/gzip | root:root | 0o644 | 3.6 KB |
/usr/share/man/man1/bp_chaos_plot.1p.gz
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application/gzip | root:root | 0o644 | 2.7 KB |
/usr/share/man/man1/bp_classify_hits_kingdom.1p.gz
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application/gzip | root:root | 0o644 | 2.7 KB |
/usr/share/man/man1/bp_composite_LD.1p.gz
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application/gzip | root:root | 0o644 | 2.2 KB |
/usr/share/man/man1/bp_dbsplit.1p.gz
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application/gzip | root:root | 0o644 | 2.5 KB |
/usr/share/man/man1/bp_download_query_genbank.1p.gz
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application/gzip | root:root | 0o644 | 2.1 KB |
/usr/share/man/man1/bp_einfo.1p.gz
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application/gzip | root:root | 0o644 | 2.3 KB |
/usr/share/man/man1/bp_extract_feature_seq.1p.gz
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application/gzip | root:root | 0o644 | 2.2 KB |
/usr/share/man/man1/bp_fastam9_to_table.1p.gz
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application/gzip | root:root | 0o644 | 2.2 KB |
/usr/share/man/man1/bp_fast_load_gff.1p.gz
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application/gzip | root:root | 0o644 | 3.5 KB |
/usr/share/man/man1/bp_fetch.1p.gz
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application/gzip | root:root | 0o644 | 3.3 KB |
/usr/share/man/man1/bp_filter_search.1p.gz
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application/gzip | root:root | 0o644 | 2.2 KB |
/usr/share/man/man1/bp_flanks.1p.gz
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application/gzip | root:root | 0o644 | 3.4 KB |
/usr/share/man/man1/bp_gccalc.1p.gz
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application/gzip | root:root | 0o644 | 2.4 KB |
/usr/share/man/man1/bp_genbank2gff.1p.gz
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application/gzip | root:root | 0o644 | 2.7 KB |
/usr/share/man/man1/bp_genbank2gff3.1p.gz
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application/gzip | root:root | 0o644 | 5.1 KB |
/usr/share/man/man1/bp_generate_histogram.1p.gz
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application/gzip | root:root | 0o644 | 2.3 KB |
/usr/share/man/man1/bp_heterogeneity_test.1p.gz
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application/gzip | root:root | 0o644 | 2.3 KB |
/usr/share/man/man1/bp_hivq.1p.gz
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application/gzip | root:root | 0o644 | 3.6 KB |
/usr/share/man/man1/bp_hmmer_to_table.1p.gz
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application/gzip | root:root | 0o644 | 2.2 KB |
/usr/share/man/man1/bp_index.1p.gz
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application/gzip | root:root | 0o644 | 3.0 KB |
/usr/share/man/man1/bp_load_gff.1p.gz
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application/gzip | root:root | 0o644 | 3.2 KB |
/usr/share/man/man1/bp_local_taxonomydb_query.1p.gz
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application/gzip | root:root | 0o644 | 2.1 KB |
/usr/share/man/man1/bp_make_mrna_protein.1p.gz
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application/gzip | root:root | 0o644 | 2.1 KB |
/usr/share/man/man1/bp_mask_by_search.1p.gz
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application/gzip | root:root | 0o644 | 2.7 KB |
/usr/share/man/man1/bp_meta_gff.1p.gz
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