/usr/share/xcrysden/examples/Scripting/colorplane_animation.tcl is in xcrysden-data 1.5.53-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 | # ------------------------------------------------------------------------
#****** ScriptingExamples/colorplane_animation.tcl ***
#
# NAME
# colorplane_animation.tcl -- a simple example for animating a contour plots
#
# USAGE
# xcrysden --script colorplane_animation.tcl
#
# COPYRIGHT
# Anton Kokalj (C) 2003
#
# PURPOSE
# This is a scripting example that shows how to produce an animation
# of colorplane/contour plots by loading the XSF file which contains
# the description of the 3D scalar field. In this example the contours
# of the LUMO molecular-orbital are animated trough the CO molecule
# for all three three basal planes (i.e. XY, XZ, and YZ).
#
# AUTHOR
# Anton Kokalj
#
# CREATION DATE
# Sometime in February 2003
#
# SOURCE
# ------------------------------------------------------------------------
# load the structure (the argument to scription:open is the command line
# ------------------------------------------------------------------------
scripting::open --xsf $env(XCRYSDEN_TOPDIR)/examples/Xcrysden_Structure_Files/CO_lumo.xsf.gz
# ------------------------------------------------------------------------
# display the structure in appropriate display-mode
# ------------------------------------------------------------------------
#-----
# this is Lighting-On modes:
#-----
scripting::lighting On
# choose a given 3D-display mode
#scripting::displayMode3D Stick
scripting::displayMode3D Pipe&Ball
#scripting::displayMode3D BallStick
#scripting::displayMode3D SpaceFill
#----
# ------------------------------------------------------------------------
# maximize the XCRYSDEN main window
# ------------------------------------------------------------------------
#scripting::mainWindow maximize
scripting::displayWindow fullscreen
# ------------------------------------------------------------------------
# load the 3D scalar field
# ------------------------------------------------------------------------
scripting::scalarField3D::load
# ------------------------------------------------------------------------
# hide the isosourface control window
# ------------------------------------------------------------------------
IsoControl_Hide
# alternatively you could do
#wm withdraw .iso
# ------------------------------------------------------------------------
# this is preliminary, used for the sake of better visualizing
# effect. See below the desciption of the two functions used here.
# ------------------------------------------------------------------------
scripting::scalarField3D::configure \
-isosurface 0 \
-interpolation_degree 2 \
-basalplane 2 \
-colorbasis BLUE-WHITE-RED \
-scalefunction LINEAR \
-colorplane 1 \
-isoline 1 \
-colorplane_lighting 0 \
-cpl_transparency 1 \
-cpl_thermometer 1 \
-2Dlowvalue -0.2 \
-2Dhighvalue +0.2 \
-2Dnisoline 11 \
-anim_step 1 \
-current_slide 1 \
-isoline_color {property color} \
-isoline_width 3 \
# -isoline_monocolor \#000000
scripting::scalarField3D::render
# ------------------------------------------------------------------------
# zoom and rotate the structure
# ------------------------------------------------------------------------
scripting::zoom -0.08 8
scripting::rotate x -5 18
scripting::rotate y +5 15
# do the animation show forever
while {1} {
#
# description of scripting::scalarField3D::configure options:
#
# ------------------------------------------------------------------------
# OPTION:: ALLOWED-VALUES + Description STATUS
# ------------------------------------------------------------------------
# -isosurface 0|1 REQUIRED
# 0 = do not render isosurface
# 1 = render isosurface
#
# -interpolation_degree integer OPTIONAL
# degree of scalar-field interpolation
#
# -isolevel real REQUIRED
# the isovalue of isosurface
#
# -plusminus 0|1
# 0 = display only the isosurface of isovalue
# specified by -isolevel
# 1 = display the two isosurfaces of +-isovalue
#
# -revertsides pos|neg|{pos neg}
# pos = revert the front- and back-side of isovalue
# isosurface
# neg = revert the front- and back-side of -isovalue
# isosurface
# -revertnormals pos|neg|{pos neg}
# pos = revert the normals of isovalue isosurface
# neg = revert the normals of -isovalue isosurface
#
# -basalplane 0|1|2
# show the ith basal plane (0=xy, 1=xz, 2=yz)
# as colorplane and/or isolines (as specified by
# -colorplane and -isoline options)
#
# -colorbasis MONOCHROME|RAINBOW|RGB|GEOGRAPHIC|BLUE-WHITE-RED
# the color basis for the colorplane
#
# -scalefunction LINEAR|LOG10|SQRT|3th-ROOT|EXP(x)|EXP(x^2)
# the scalefunctions for contour/colorplane plots
#
# -expand2D none|whole|specify
# none = do not expand the contour/colorplane plots
# along the periodic directions
# whole = expand the contour/colorplane plots
# over the whole structure along the
# periodic directions
# specify = expand the contour/colorplane plots
# along the periodic directions as specified
# by -expand2D_X, -expand2D_Y, and
# -expand2D_Z factors
#
# -expand2D_X positive-integer
# expand contour/colorplane n-times along the 1st
# periodic dimension
#
#
# -expand2D_Y positive-integer
# expand contour/colorplane n-times along the 2nd
# periodic dimension
#
# -expand2D_Z positive-integer
# expand contour/colorplane n-times along the 3rd
# periodic dimension
#
# -colorplane 0|1
# do not display|display the colorplane
#
# -isoline 0|1
# do not display|display the isolines
#
# -colorplane_lighting 0|1
# 0 = do not perform lighting for colorplane
# 1 = perform lighting for colorplane
#
# -cpl_transparency 0|1
# 0 = render colorplane as non-transparent
# 1 = render colorplane as transparent
#
# -cpl_thermometer 0|1
# 0 = do not make a legend (i.e. thermometer) for
# colorplane colors
# 1 = make a legend (i.e. thermometer) for
# colorplane colors
#
# -2Dlowvalue real
# minimum rendered value of colorplane/isolines
#
# -2Dhighvalue real
# maximum rendered value of colorplane/isolines
#
# -2Dnisoline positive-integer
# number of isoline
#
# -anim_step positive-integer
# animation step
#
# -current_slide positive-integer
# iD (i.e. sequential number) of colorplane
#
# -isoline_color monocolor|{property color}
# monocolor = all isolines have the same color
# {property color} = isolines are colorer according
# to color-basis
#
# -isoline_width positive-integer
# width (i.e. thickness) of isolines
#
# -isoline_monocolor #rgb
# color of the monolor-type isolines
#
# ------------------------------------------------------------------------
#
#
# Example:
#
# scripting::scalarField3D::configure \
# -isosurface 1 \
# -interpolation_degree 2 \
# -isolevel 0.1 \
# -plusminus 1 \
# -revertsides {pos neg} \
# -revertnormal {pos neg} \
# -basalplane 0 \
# -colorbasis BLUE-WHITE-RED \
# -scalefunction LINEAR \
# -expand2D specify \
# -expand2D_X 1 \
# -expand2D_Y 1 \
# -expand2D_Z 1 \
# -colorplane 1 \
# -isoline 1 \
# -colorplane_lighting 0 \
# -cpl_transparency 0 \
# -cpl_thermometer 1 \
# -2Dlowvalue -0.1 \
# -2Dhighvalue +0.1 \
# -2Dnisoline 11 \
# -anim_step 1 \
# -current_slide 30 \
# -isoline_color monocolor \
# -isoline_width 3 \
# -isoline_monocolor \#000000
#
# ------------------------------------------------------------------------
# configure, i.e., specify how to render the scalar field
#
# render 2nd basal plane
# ------------------------------------------------------------------------
scripting::scalarField3D::configure \
-isosurface 0 \
-interpolation_degree 2 \
-basalplane 2 \
-colorbasis BLUE-WHITE-RED \
-scalefunction LINEAR \
-colorplane 1 \
-isoline 1 \
-colorplane_lighting 0 \
-cpl_transparency 1 \
-cpl_thermometer 1 \
-2Dlowvalue -0.2 \
-2Dhighvalue +0.2 \
-2Dnisoline 11 \
-anim_step 1 \
-current_slide 1 \
-isoline_color {property color} \
-isoline_width 3 \
# -isoline_monocolor \#000000
# ------------------------------------------------------------------------
# render the 3D scalar field as requested by
# scripting::scalarField3D::configure
# ------------------------------------------------------------------------
scripting::scalarField3D::render
# ------------------------------------------------------------------------
# now let us do the animation
# ------------------------------------------------------------------------
for {set i 1} {$i <= 49} {incr i} {
scripting::scalarField3D::configure -current_slide $i
scripting::scalarField3D::render
}
for {set i 49} {$i > 0} {incr i -1} {
scripting::scalarField3D::configure -current_slide $i
scripting::scalarField3D::render
}
scripting::scalarField3D::configure -colorplane 0 -isoline 0 -cpl_thermometer 0
# now render the 1st basal plane
scripting::scalarField3D::configure \
-basalplane 1 \
-colorbasis BLUE-WHITE-RED \
-scalefunction LINEAR \
-colorplane 1 \
-isoline 1 \
-colorplane_lighting 0 \
-cpl_transparency 1 \
-cpl_thermometer 1 \
-2Dlowvalue -0.2 \
-2Dhighvalue +0.2 \
-2Dnisoline 11 \
-anim_step 49 \
-current_slide 1 \
-isoline_color {property color} \
-isoline_width 3 \
# -isoline_monocolor \#000000
scripting::scalarField3D::render
scripting::rotate y 5 18
for {set i 1} {$i <= 49} {incr i} {
scripting::scalarField3D::configure -current_slide $i
scripting::scalarField3D::render
}
for {set i 49} {$i > 0} {incr i -1} {
scripting::scalarField3D::configure -current_slide $i
scripting::scalarField3D::render
}
scripting::scalarField3D::configure -colorplane 0 -isoline 0 \
-cpl_thermometer 0
# now render the 3rd basal plane
scripting::scalarField3D::configure \
-basalplane 3 \
-colorbasis BLUE-WHITE-RED \
-scalefunction LINEAR \
-colorplane 1 \
-isoline 1 \
-colorplane_lighting 0 \
-cpl_transparency 1 \
-cpl_thermometer 1 \
-2Dlowvalue -0.2 \
-2Dhighvalue +0.2 \
-2Dnisoline 11 \
-anim_step 1 \
-current_slide 1 \
-isoline_color {property color} \
-isoline_width 3 \
# -isoline_monocolor \#000000
scripting::scalarField3D::render
scripting::rotate y -5 18
scripting::rotate x +5 26
for {set i 1} {$i <= 49} {incr i} {
scripting::scalarField3D::configure -current_slide $i
scripting::scalarField3D::render
}
for {set i 49} {$i > 0} {incr i -1} {
scripting::scalarField3D::configure -current_slide $i
scripting::scalarField3D::render
}
scripting::rotate x -5 26
scripting::scalarField3D::configure -colorplane 0 -isoline 0 \
-cpl_thermometer 0
}
#****
# ------------------------------------------------------------------------
|