/usr/share/doc/ruby-bio/seqdatabase.ini is in ruby-bio 1.4.2-3.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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[embl]
protocol=biofetch
location=http://bioruby.org/cgi-bin/biofetch.rb
dbname=embl
[embl-upd]
protocol=biofetch
location=http://bioruby.org/cgi-bin/biofetch.rb
dbname=embl-upd
[embl_biofetch]
protocol=biofetch
location=http://www.ebi.ac.uk/cgi-bin/dbfetch
dbname=embl
[embl_biosql]
protocol=biosql
location=localhost
dbname=biosql
driver=postgres
user=hack
pass=
biodbname=embl
[embl_biocorba]
protocol=bsane-corba
location=sqldbsrv.ior
[embl_xembl]
protocol=xembl
location=http://www.ebi.ac.uk/xembl/XEMBL.wsdl
format=Bsml
[embl_flat]
protcol=flat
location=/export/database/
dbname=embl
[genbank_bdb]
protcol=flat
location=/export/database/
dbname=genbank
[swissprot]
protocol=biofetch
location=http://bioruby.org/cgi-bin/biofetch.rb
dbname=swissprot
[swissprot-upd]
protocol=biofetch
location=http://bioruby.org/cgi-bin/biofetch.rb
dbname=swissprot-upd
[swissprot_biofetch]
protocol=biofetch
location=http://www.ebi.ac.uk/cgi-bin/dbfetch
dbname=swall
[swissprot_biosql]
protocol=biosql
location=db.bioruby.org
dbname=biosql
driver=mysql
user=root
pass=
biodbname=sp
[genbank]
protocol=biofetch
location=http://bioruby.org/cgi-bin/biofetch.rb
dbname=genbank
[genbank-upd]
protocol=biofetch
location=http://bioruby.org/cgi-bin/biofetch.rb
dbname=genbank-upd
[genbank_biosql]
protocol=biosql
location=db.bioruby.org
dbname=biosql
driver=mysql
user=root
pass=
biodbname=gb
[refseq]
protocol=biofetch
location=http://bioruby.org/cgi-bin/biofetch.rb
dbname=refseq
[refseq_biosql]
protocol=biosql
location=db.bioruby.org
dbname=biosql
driver=mysql
user=
pass=
biodbname=rs
[kegg-pathway]
protocol=biofetch
location=http://bioruby.org/cgi-bin/biofetch.rb
dbname=pathway
[kegg-genome]
protocol=biofetch
location=http://bioruby.org/cgi-bin/biofetch.rb
dbname=genome
[kegg-genes]
protocol=biofetch
location=http://bioruby.org/cgi-bin/biofetch.rb
dbname=genes
[kegg-vgenes]
protocol=biofetch
location=http://bioruby.org/cgi-bin/biofetch.rb
dbname=vgenes
[aaindex]
protocol=biofetch
location=http://bioruby.org/cgi-bin/biofetch.rb
dbname=aaindex
[blocks]
protocol=biofetch
location=http://bioruby.org/cgi-bin/biofetch.rb
dbname=blocks
[enzyme]
protocol=biofetch
location=http://bioruby.org/cgi-bin/biofetch.rb
dbname=enzyme
[epd]
protocol=biofetch
location=http://bioruby.org/cgi-bin/biofetch.rb
dbname=epd
[litdb]
protocol=biofetch
location=http://bioruby.org/cgi-bin/biofetch.rb
dbname=litdb
[omim]
protocol=biofetch
location=http://bioruby.org/cgi-bin/biofetch.rb
dbname=omim
[pdb]
protocol=biofetch
location=http://bioruby.org/cgi-bin/biofetch.rb
dbname=pdb
[pdbstr]
protocol=biofetch
location=http://bioruby.org/cgi-bin/biofetch.rb
dbname=pdbstr
[pfam]
protocol=biofetch
location=http://bioruby.org/cgi-bin/biofetch.rb
dbname=pfam
[pir]
protocol=biofetch
location=http://bioruby.org/cgi-bin/biofetch.rb
dbname=pir
[pmd]
protocol=biofetch
location=http://bioruby.org/cgi-bin/biofetch.rb
dbname=pmd
[prf]
protocol=biofetch
location=http://bioruby.org/cgi-bin/biofetch.rb
dbname=prf
[prints]
protocol=biofetch
location=http://bioruby.org/cgi-bin/biofetch.rb
dbname=prints
[prodom]
protocol=biofetch
location=http://bioruby.org/cgi-bin/biofetch.rb
dbname=prodom
[prosdoc]
protocol=biofetch
location=http://bioruby.org/cgi-bin/biofetch.rb
dbname=prosdoc
[prosite]
protocol=biofetch
location=http://bioruby.org/cgi-bin/biofetch.rb
dbname=prosite
[transfac]
protocol=biofetch
location=http://bioruby.org/cgi-bin/biofetch.rb
dbname=transfac
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