ruby-bio 1.4.2-3 / usr / lib

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/usr/lib/ is in ruby-bio 1.4.2-3.

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File Mime Type Owner Mode Size
..
/usr/lib/ruby/vendor_ruby/ root:root 0o755
/usr/lib/ruby/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio.rb text/x-ruby root:root 0o644 9.5 KB
/usr/lib/ruby/vendor_ruby/bio/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/pathway.rb text/x-c++ root:root 0o644 22.1 KB
/usr/lib/ruby/vendor_ruby/bio/map.rb text/x-ruby root:root 0o644 12.8 KB
/usr/lib/ruby/vendor_ruby/bio/data/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/data/na.rb text/x-c++ root:root 0o644 3.6 KB
/usr/lib/ruby/vendor_ruby/bio/data/codontable.rb text/x-c++ root:root 0o644 23.1 KB
/usr/lib/ruby/vendor_ruby/bio/data/aa.rb text/x-c++ root:root 0o644 4.9 KB
/usr/lib/ruby/vendor_ruby/bio/util/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/util/color_scheme.rb text/x-ruby root:root 0o644 4.9 KB
/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/ root:root 0o755
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/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/helix.rb text/x-ruby root:root 0o644 1.2 KB
/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/hydropathy.rb text/x-ruby root:root 0o644 1.3 KB
/usr/lib/ruby/vendor_ruby/bio/appl/sosui/ root:root 0o755
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/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/taylor.rb text/x-ruby root:root 0o644 1.1 KB
/usr/lib/ruby/vendor_ruby/bio/io/soapwsdl.rb text/x-c++ root:root 0o644 2.3 KB
/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/zappo.rb text/x-ruby root:root 0o644 1.1 KB
/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/buried.rb text/x-ruby root:root 0o644 1.2 KB
/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/nucleotide.rb text/x-ruby root:root 0o644 690 bytes
/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/single_strand/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/single_strand/cut_locations_in_enzyme_notation.rb text/x-c++ root:root 0o644 4.0 KB
/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/enzymes.yaml text/plain root:root 0o644 87.5 KB
/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/sorted_num_array.rb text/x-c++ root:root 0o644 4.3 KB
/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/string_formatting.rb text/x-c++ root:root 0o644 2.8 KB
/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/cut_symbol.rb text/x-c++ root:root 0o644 2.7 KB
/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/double_stranded.rb text/x-c++ root:root 0o644 10.6 KB
/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/double_stranded/ root:root 0o755
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/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/double_stranded/aligned_strands.rb text/x-c++ root:root 0o644 4.2 KB
/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/double_stranded/cut_locations.rb text/x-c++ root:root 0o644 1.8 KB
/usr/lib/ruby/vendor_ruby/bio/io/flatfile/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/double_stranded/cut_locations_in_enzyme_notation.rb text/x-c++ root:root 0o644 3.2 KB
/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/double_stranded/cut_location_pair.rb text/x-c++ root:root 0o644 2.9 KB
/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/analysis.rb text/x-c++ root:root 0o644 9.6 KB
/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/single_strand_complement.rb text/x-c++ root:root 0o644 730 bytes
/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/vertical_cut_range.rb text/x-c++ root:root 0o644 2.5 KB
/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/sequence_range/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/sequence_range/fragment.rb text/x-c++ root:root 0o644 1.2 KB
/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/sequence_range/calculated_cuts.rb text/x-c++ root:root 0o644 9.0 KB
/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/sequence_range/fragments.rb text/x-c++ root:root 0o644 949 bytes
/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/horizontal_cut_range.rb text/x-c++ root:root 0o644 1.8 KB
/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/sequence_range.rb text/x-c++ root:root 0o644 9.3 KB
/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/cut_ranges.rb text/x-c++ root:root 0o644 1.2 KB
/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/cut_range.rb text/x-c++ root:root 0o644 593 bytes
/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/single_strand.rb text/x-c++ root:root 0o644 6.6 KB
/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/analysis_basic.rb text/x-c++ root:root 0o644 8.2 KB
/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/dense_int_array.rb text/x-c++ root:root 0o644 4.2 KB
/usr/lib/ruby/vendor_ruby/bio/util/contingency_table.rb text/plain root:root 0o644 11.5 KB
/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme.rb text/x-c++ root:root 0o644 8.1 KB
/usr/lib/ruby/vendor_ruby/bio/util/sirna.rb text/x-ruby root:root 0o644 6.9 KB
/usr/lib/ruby/vendor_ruby/bio/sequence/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/sequence/na.rb text/x-c++ root:root 0o644 14.0 KB
/usr/lib/ruby/vendor_ruby/bio/sequence/adapter.rb text/x-ruby root:root 0o644 3.7 KB
/usr/lib/ruby/vendor_ruby/bio/sequence/format.rb text/x-c++ root:root 0o644 10.5 KB
/usr/lib/ruby/vendor_ruby/bio/sequence/aa.rb text/x-c++ root:root 0o644 3.1 KB
/usr/lib/ruby/vendor_ruby/bio/sequence/common.rb text/x-c++ root:root 0o644 9.0 KB
/usr/lib/ruby/vendor_ruby/bio/sequence/generic.rb text/x-c++ root:root 0o644 428 bytes
/usr/lib/ruby/vendor_ruby/bio/sequence/dblink.rb text/x-c++ root:root 0o644 1.3 KB
/usr/lib/ruby/vendor_ruby/bio/sequence/format_raw.rb text/x-ruby root:root 0o644 530 bytes
/usr/lib/ruby/vendor_ruby/bio/sequence/sequence_masker.rb text/x-c++ root:root 0o644 2.9 KB
/usr/lib/ruby/vendor_ruby/bio/sequence/compat.rb text/x-c++ root:root 0o644 3.7 KB
/usr/lib/ruby/vendor_ruby/bio/db/kegg/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/sequence/quality_score.rb text/x-c++ root:root 0o644 5.8 KB
/usr/lib/ruby/vendor_ruby/bio/shell.rb text/x-ruby root:root 0o644 1.0 KB
/usr/lib/ruby/vendor_ruby/bio/db.rb text/x-c++ root:root 0o644 8.1 KB
/usr/lib/ruby/vendor_ruby/bio/shell/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/shell/object.rb text/x-c++ root:root 0o644 1.1 KB
/usr/lib/ruby/vendor_ruby/bio/shell/plugin/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/shell/plugin/entry.rb text/x-ruby root:root 0o644 3.7 KB
/usr/lib/ruby/vendor_ruby/bio/shell/plugin/ncbirest.rb text/x-ruby root:root 0o644 1.5 KB
/usr/lib/ruby/vendor_ruby/bio/shell/plugin/obda.rb text/x-ruby root:root 0o644 870 bytes
/usr/lib/ruby/vendor_ruby/bio/shell/plugin/seq.rb text/x-c++ root:root 0o644 6.5 KB
/usr/lib/ruby/vendor_ruby/bio/shell/plugin/keggapi.rb text/x-ruby root:root 0o644 4.8 KB
/usr/lib/ruby/vendor_ruby/bio/shell/plugin/psort.rb text/x-ruby root:root 0o644 1.2 KB
/usr/lib/ruby/vendor_ruby/bio/shell/plugin/codon.rb text/x-ruby root:root 0o644 5.9 KB
/usr/lib/ruby/vendor_ruby/bio/shell/plugin/das.rb text/x-ruby root:root 0o644 1.0 KB
/usr/lib/ruby/vendor_ruby/bio/shell/plugin/emboss.rb text/x-ruby root:root 0o644 378 bytes
/usr/lib/ruby/vendor_ruby/bio/shell/plugin/blast.rb text/x-ruby root:root 0o644 789 bytes
/usr/lib/ruby/vendor_ruby/bio/shell/plugin/flatfile.rb text/x-ruby root:root 0o644 2.3 KB
/usr/lib/ruby/vendor_ruby/bio/shell/plugin/togows.rb text/x-ruby root:root 0o644 1.1 KB
/usr/lib/ruby/vendor_ruby/bio/shell/plugin/soap.rb text/x-ruby root:root 0o644 2.1 KB
/usr/lib/ruby/vendor_ruby/bio/shell/plugin/midi.rb text/x-c++ root:root 0o644 9.8 KB
/usr/lib/ruby/vendor_ruby/bio/shell/demo.rb text/x-ruby root:root 0o644 4.9 KB
/usr/lib/ruby/vendor_ruby/bio/shell/interface.rb text/x-ruby root:root 0o644 4.3 KB
/usr/lib/ruby/vendor_ruby/bio/shell/irb.rb text/x-ruby root:root 0o644 2.3 KB
/usr/lib/ruby/vendor_ruby/bio/shell/setup.rb text/x-c++ root:root 0o644 2.5 KB
/usr/lib/ruby/vendor_ruby/bio/shell/script.rb text/x-ruby root:root 0o644 476 bytes
/usr/lib/ruby/vendor_ruby/bio/shell/rails/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby-link.gif image/gif root:root 0o644 2.7 KB
/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/commands.rhtml text/plain root:root 0o644 142 bytes
/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/spinner.gif image/gif root:root 0o644 1.5 KB
/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby_helper.rb text/x-ruby root:root 0o644 1.1 KB
/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_variables.rhtml text/plain root:root 0o644 188 bytes
/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby-gem.png image/png root:root 0o644 6.8 KB
/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_classes.rhtml text/plain root:root 0o644 103 bytes
/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_log.rhtml text/plain root:root 0o644 818 bytes
/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby.css text/plain root:root 0o644 4.8 KB
/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby_controller.rb text/x-c++ root:root 0o644 3.5 KB
/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby-bg.gif image/gif root:root 0o644 1.4 KB
/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/index.rhtml text/plain root:root 0o644 918 bytes
/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_modules.rhtml text/plain root:root 0o644 110 bytes
/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/history.rhtml text/plain root:root 0o644 219 bytes
/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_methods.rhtml text/html root:root 0o644 215 bytes
/usr/lib/ruby/vendor_ruby/bio/io/flatfile/bdb.rb text/x-ruby root:root 0o644 5.5 KB
/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby.rhtml text/html root:root 0o644 1.2 KB
/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/bioruby_generator.rb text/x-c++ root:root 0o644 1.4 KB
/usr/lib/ruby/vendor_ruby/bio/shell/web.rb text/x-ruby root:root 0o644 2.2 KB
/usr/lib/ruby/vendor_ruby/bio/shell/core.rb text/x-ruby root:root 0o644 12.6 KB
/usr/lib/ruby/vendor_ruby/bio/io/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/io/ensembl.rb text/x-c++ root:root 0o644 5.7 KB
/usr/lib/ruby/vendor_ruby/bio/io/ncbirest.rb text/x-c++ root:root 0o644 27.4 KB
/usr/lib/ruby/vendor_ruby/bio/io/fastacmd.rb text/x-c++ root:root 0o644 4.1 KB
/usr/lib/ruby/vendor_ruby/bio/io/dbget.rb text/x-c++ root:root 0o644 5.2 KB
/usr/lib/ruby/vendor_ruby/bio/io/keggapi.rb text/x-c++ root:root 0o644 10.0 KB
/usr/lib/ruby/vendor_ruby/bio/io/ddbjxml.rb text/x-c++ root:root 0o644 10.5 KB
/usr/lib/ruby/vendor_ruby/bio/io/higet.rb text/x-c++ root:root 0o644 1.3 KB
/usr/lib/ruby/vendor_ruby/bio/io/ddbjrest.rb text/x-c++ root:root 0o644 12.7 KB
/usr/lib/ruby/vendor_ruby/bio/io/ncbisoap.rb text/x-c++ root:root 0o644 3.8 KB
/usr/lib/ruby/vendor_ruby/bio/io/hinv.rb text/x-ruby root:root 0o644 11.5 KB
/usr/lib/ruby/vendor_ruby/bio/io/das.rb text/x-c++ root:root 0o644 11.7 KB
/usr/lib/ruby/vendor_ruby/bio/db/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/io/flatfile/indexer.rb text/x-ruby root:root 0o644 26.8 KB
/usr/lib/ruby/vendor_ruby/bio/io/flatfile/index.rb text/x-ruby root:root 0o644 33.5 KB
/usr/lib/ruby/vendor_ruby/bio/io/flatfile/splitter.rb text/x-ruby root:root 0o644 8.2 KB
/usr/lib/ruby/vendor_ruby/bio/io/flatfile/buffer.rb text/x-ruby root:root 0o644 5.8 KB
/usr/lib/ruby/vendor_ruby/bio/io/flatfile/autodetection.rb text/x-ruby root:root 0o644 16.4 KB
/usr/lib/ruby/vendor_ruby/bio/io/biosql/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/io/biosql/config/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/io/biosql/config/database.yml text/plain root:root 0o644 379 bytes
/usr/lib/ruby/vendor_ruby/bio/io/biosql/biosql.rb text/x-ruby root:root 0o644 1.9 KB
/usr/lib/ruby/vendor_ruby/bio/io/biosql/ar-biosql.rb text/x-ruby root:root 0o644 12.4 KB
/usr/lib/ruby/vendor_ruby/bio/io/fetch.rb text/x-ruby root:root 0o644 6.5 KB
/usr/lib/ruby/vendor_ruby/bio/io/flatfile.rb text/x-ruby root:root 0o644 13.3 KB
/usr/lib/ruby/vendor_ruby/bio/io/pubmed.rb text/x-c++ root:root 0o644 6.1 KB
/usr/lib/ruby/vendor_ruby/bio/io/togows.rb text/x-ruby root:root 0o644 13.6 KB
/usr/lib/ruby/vendor_ruby/bio/io/sql.rb text/x-ruby root:root 0o644 2.6 KB
/usr/lib/ruby/vendor_ruby/bio/io/registry.rb text/x-c++ root:root 0o644 7.4 KB
/usr/lib/ruby/vendor_ruby/bio/io/ebisoap.rb text/x-c++ root:root 0o644 3.0 KB
/usr/lib/ruby/vendor_ruby/bio/db/fasta.rb text/x-ruby root:root 0o644 7.2 KB
/usr/lib/ruby/vendor_ruby/bio/db/genbank/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/db/genbank/refseq.rb text/x-c++ root:root 0o644 380 bytes
/usr/lib/ruby/vendor_ruby/bio/db/genbank/genbank.rb text/x-c++ root:root 0o644 4.1 KB
/usr/lib/ruby/vendor_ruby/bio/db/genbank/genbank_to_biosequence.rb text/x-ruby root:root 0o644 1.8 KB
/usr/lib/ruby/vendor_ruby/bio/db/genbank/common.rb text/x-c++ root:root 0o644 7.5 KB
/usr/lib/ruby/vendor_ruby/bio/db/genbank/genpept.rb text/x-c++ root:root 0o644 1.2 KB
/usr/lib/ruby/vendor_ruby/bio/db/genbank/format_genbank.rb text/x-ruby root:root 0o644 5.4 KB
/usr/lib/ruby/vendor_ruby/bio/db/genbank/ddbj.rb text/x-c++ root:root 0o644 411 bytes
/usr/lib/ruby/vendor_ruby/bio/db/soft.rb text/x-c++ root:root 0o644 13.9 KB
/usr/lib/ruby/vendor_ruby/bio/db/nexus.rb text/x-ruby root:root 0o644 54.9 KB
/usr/lib/ruby/vendor_ruby/bio/db/pdb.rb text/x-ruby root:root 0o644 594 bytes
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/usr/lib/ruby/vendor_ruby/bio/db/sanger_chromatogram/chromatogram_to_biosequence.rb text/x-ruby root:root 0o644 803 bytes
/usr/lib/ruby/vendor_ruby/bio/db/sanger_chromatogram/abif.rb text/x-ruby root:root 0o644 5.2 KB
/usr/lib/ruby/vendor_ruby/bio/db/embl/sptr.rb text/x-c++ root:root 0o644 40.4 KB
/usr/lib/ruby/vendor_ruby/bio/db/sanger_chromatogram/chromatogram.rb text/x-ruby root:root 0o644 5.5 KB
/usr/lib/ruby/vendor_ruby/bio/db/prosite.rb text/x-c++ root:root 0o644 11.0 KB
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/usr/lib/ruby/vendor_ruby/bio/db/phyloxml/phyloxml_elements.rb text/x-ruby root:root 0o644 35.4 KB
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