/usr/bin/nipype_display_crash is in python-nipype 0.5.3-2wheezy2.
This file is owned by root:root, with mode 0o755.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 | #!/usr/bin/python
"""Displays crash information from Nipype crash files. For certain crash files,
one can rerun a failed node in a temp directory.
"""
import argparse
from nipype.utils.filemanip import loadcrash
def display_crash_files(crashfile, rerun):
"""display crash file content and rerun if required"""
crash_data = loadcrash(crashfile)
node = None
if 'node' in crash_data:
node = crash_data['node']
tb = crash_data['traceback']
print "\n"
print "File: %s"%crashfile
if node:
print "Node: %s"%node
if node.base_dir:
print "Working directory: %s"%node.output_dir()
else:
print "Node crashed before execution"
print "\n"
print "Node inputs:"
print node.inputs
print "\n"
print "Traceback: "
print ''.join(tb)
print "\n"
if rerun:
if node is None:
print "No node in crashfile. Cannot rerun"
return
print "Rerunning node"
node.base_dir = None
node.config = {'execution': {'crashdump_dir': '/tmp'}}
node.run()
print "\n"
if __name__ == "__main__":
parser = argparse.ArgumentParser(prog='nipype_display_crash',
description=__doc__)
parser.add_argument('crashfile', metavar='f', type=str,
help='crash file to display')
parser.add_argument('-r','--rerun', dest='rerun',
default=False, action="store_true",
help='rerun crashed node')
args = parser.parse_args()
display_crash_files(args.crashfile, args.rerun)
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