/usr/share/gmod/chado/modules/phylogeny/ is in libchado-perl 1.22-4.
This file is owned by root:root, with mode 0o755.
..
/usr/share/gmod/chado/modules/phylogeny/Changes
/usr/share/gmod/chado/modules/phylogeny/examples/
/usr/share/gmod/chado/modules/phylogeny/examples/README
/usr/share/gmod/chado/modules/phylogeny/examples/org.chado-xml
/usr/share/gmod/chado/modules/phylogeny/examples/sample-phylo.chado-xml
/usr/share/gmod/chado/modules/phylogeny/examples/sample-phylo.nhx
/usr/share/gmod/chado/modules/phylogeny/functions/
/usr/share/gmod/chado/modules/phylogeny/functions/phylo.plpgsql
/usr/share/gmod/chado/modules/phylogeny/functions/phylo.sqlapi
/usr/share/gmod/chado/modules/phylogeny/phylogeny.html
/usr/share/gmod/chado/modules/phylogeny/phylogeny.sql