This file is indexed.

/usr/share/gromacs/top/xlateat.dat is in gromacs-data 4.5.5-2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

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ILE 	 CD1 	CD
ILE	 HD11   HD1
ILE      HD12   HD2
ILE      HD13   HD3
HOH 	 O   	OW
HOH      OW1    OW
HO4 	 O   	OW
HO4      OW1    OW
HO5 	 O   	OW
HO5      OW1    OW
HEME	 N_A	NA
HEME	 N_B	NB
HEME	 N_C	NC
HEME	 N_D	ND
protein	 O1	O
protein	 O2	OXT
protein	 OT1	O
protein	 OT2	OXT
protein	 OT	OXT
protein  O'     O
protein  O''    OXT
protein  OC1	O
protein  OC2	OXT
protein  HN     H
protein  HT1    H1
protein  HT2    H2
protein  HT3    H3