This file is indexed.

/usr/share/gromacs/top/oplsaa.ff/aminoacids.c.tdb is in gromacs-data 4.5.5-2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
[ None ]

[ GLY-COO- ]
[ replace ]
CA	CA	opls_284	12.011	-0.02
C	C	opls_271	12.011	0.7
O	O1	opls_272	15.9994	-0.8
OXT	O2	opls_272	15.9994	-0.8
[ add ]
2	8	O	C	CA	N
	opls_272	15.9994	-0.8
[ impropers ]
CA	O1	C	O2	improper_O_C_X_Y

[ GLY-ZWITTERION_COO- ]
[ replace ]
CA	CA	opls_298	12.011	0.09
C	C	opls_271	12.011	0.7
O	O1	opls_272	15.9994	-0.8
OXT	O2	opls_272	15.9994	-0.8
[ add ]
2	8	O	C	CA	N
	opls_272	15.9994	-0.8
[ impropers ]
CA	O1	C	O2	improper_O_C_X_Y

[ PRO-COO- ]
[ replace ]
CA	CA	opls_285	12.011	-0.09
C	C	opls_271	12.011	0.7
O	O1	opls_272	15.9994	-0.8
OXT	O2	opls_272	15.9994	-0.8
[ add ]
2	8	O	C	CA	N
	opls_272	15.9994	-0.8
[ impropers ]
CA	O1	C	O2	improper_O_C_X_Y

[ PRO-ZWITTERION_COO- ]
[ replace ]
CA	CA	opls_246	12.011	0.13
C	C	opls_271	12.011	0.7
O	O1	opls_272	15.9994	-0.8
OXT	O2	opls_272	15.9994	-0.8
[ add ]
2	8	O	C	CA	N
	opls_272	15.9994	-0.8
[ impropers ]
CA	O1	C	O2	improper_O_C_X_Y

[ COO- ]
[ replace ]
CA	CA	opls_283	12.011	0.04
C	C	opls_271	12.011	0.7
O	O1	opls_272	15.9994	-0.8
OXT	O2	opls_272	15.9994	-0.8
[ add ]
2	8	O	C	CA	N
	opls_272	15.9994	-0.8
[ impropers ]
CA	O1	C	O2	improper_O_C_X_Y

[ ZWITTERION_COO- ]
[ replace ]
CA	CA	opls_299	12.011	0.15
C	C	opls_271	12.011	0.7
O	O1	opls_272	15.9994	-0.8
OXT	O2	opls_272	15.9994	-0.8
[ add ]
2	8	O	C	CA	N
	opls_272	15.9994	-0.8
[ impropers ]
CA	O1	C	O2	improper_O_C_X_Y

[ GLY-COOH ]
[ replace ]
C	C	opls_267	12.011	0.52
O	O	opls_268	15.9994	-0.53
OXT	OT	opls_269	15.9994	-0.44
[ add ]
1	2	OT	C	CA	N
	opls_269	15.9994	-0.44
1	2	HO	O	C	CA
	opls_270	1.008	0.45
[ impropers ]
CA	OT	C	O	improper_O_C_X_Y

[ COOH ]
[ replace ]
C	C	opls_267	12.011	0.52
O	O	opls_268	15.9994	-0.53
OXT	OT	opls_269	15.9994	-0.44
[ add ]
1	2	OT	C	CA	N
	opls_269	15.9994	-0.44
1	2	HO	O	C	CA
	opls_270	1.008	0.45
[ impropers ]
CA	OT	C	O	improper_O_C_X_Y