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X52273 Lactococcus lactis insertion element iso-IS904 coding for a transposase. 9/1993
LOCUS LLIS904 1245 bp DNA linear BCT 12-SEP-1993
DEFINITION Lactococcus lactis insertion element iso-IS904 coding for a
transposase.
ACCESSION X52273
VERSION X52273.1 GI:44028
KEYWORDS insertion element; insertion element iso-IS904; transposon.
SOURCE Lactococcus lactis.
ORGANISM Lactococcus lactis
Bacteria; Firmicutes; Bacillus/Clostridium group; Streptococcaceae;
Lactococcus.
REFERENCE 1 (bases 1 to 1245)
AUTHORS Rauch,P.J.G.
TITLE Direct Submission
JOURNAL Submitted (11-APR-1990) Rauch P.J.G., Netherlands Institute for
Dairy Research, P O Box 20, 6710 BA EDE, The Netherlands
REFERENCE 2 (bases 1 to 1245)
AUTHORS Rauch,P.J., Beerthuyzen,M.M. and de Vos,W.M.
TITLE Nucleotide sequence of IS904 from Lactococcus lactis subsp. lactis
strain NIZO R5
JOURNAL Nucleic Acids Res. 18 (14), 4253-4254 (1990)
MEDLINE 90332428
FEATURES Location/Qualifiers
source 1. .1245
/organism="Lactococcus lactis"
/strain="lactis NIZO R5."
/db_xref="taxon:1358"
repeat_unit 1. .39
/note="imperfect inverted repeat A"
promoter 265. .270
/note="put. -35 region (1)"
promoter 286. .291
/note="put. -10 region (1)"
misc_feature 289. .336
/note="dyad symmetry region"
promoter 302. .307
/note="put. -35 region (2)"
promoter 326. .331
/note="put. -10 region (2)"
CDS 444. .1205
/note="put. transposase (AA 1-253)"
/codon_start=1
/transl_table=11
/protein_id="CAA36516.1"
/db_xref="GI:44029"
/db_xref="SPTREMBL:Q48648"
/translation="MHRRPSKQQVEREILSEKIKAVFHEHKGRYGAVRITKVLHNTGI
MTNTKRVGKLMHLMGLYAKGSRYKYKHYNRKGSSLSRPNLINQIFKATAPNKVWLGDM
TYIPTKEGTLYLAVNIDVFSRKIVGWSMSSRMQDKLVRDYFLQACGKEHPQPGLIVHT
DQGSQYTSSRYQSTLRQVGAQSSMSRKGNPYDNAMMESFYKTLKRELINDAHFETRAE
ATQEIFKYIETYYNTKRMHSGLDYKSPKDFEKYNS"
repeat_unit 1207. .1245
/note="imperfect inverted repeat A'"
BASE COUNT 426 a 213 c 255 g 351 t
ORIGIN
>>>>LLISS1 6/1992
X62737 L.lactis plasmid pTD1 insertion sequence ISS1. 6/1992
LOCUS LLISS1 808 bp DNA linear BCT 05-JUN-1992
DEFINITION L.lactis plasmid pTD1 insertion sequence ISS1.
ACCESSION X62737
VERSION X62737.1 GI:44030
KEYWORDS insertion sequence; insertion sequence ISS1; transposase.
SOURCE Lactococcus lactis.
ORGANISM Lactococcus lactis
Bacteria; Firmicutes; Bacillus/Clostridium group; Streptococcaceae;
Lactococcus.
REFERENCE 1 (bases 1 to 808)
AUTHORS Schaefer,A., Jahns,A., Geis,A. and Teuber,M.
TITLE Distribution of the IS elements ISS1 and IS904 in lactococci
JOURNAL FEMS Microbiol. Lett. 80, 311-318 (1991)
REFERENCE 2 (bases 1 to 808)
AUTHORS Schaefer,A.
TITLE Direct Submission
JOURNAL Submitted (13-JAN-1992) Schaefer A., Institut fuer Mikrobiologie,
Bundesanstalt fuer Milchforschung, D-2300 Kiel, FRG
COMMENT See also M18290-4 & M37395-6.
FEATURES Location/Qualifiers
source 1. .808
/organism="Lactococcus lactis"
/plasmid="pTD1"
/strain="W67"
/db_xref="taxon:1358"
/insertion_seq="ISS1"
repeat_region 1. .17
/rpt_type=INVERTED
-35_signal 8. .13
-10_signal 30. .35
RBS 61. .66
CDS 74. .754
/codon_start=1
/transl_table=11
/product="putative transposase"
/protein_id="CAA44601.1"
/db_xref="GI:44031"
/db_xref="SPTREMBL:Q04224"
/translation="MNHFKGKQFKKDVIIVAVGYYLRYNLSYREVQELLYDRGINVCH
TTIYRWVQEYSKVLYYLWKKKNRQSFYSWKMDETYIKIKGRWHYLYRAIDADGLTLDI
WLRKKRDTQAAYAFLKRLHKQFGEPKAIVTDKAPSLGSAFRKLQSVGLYTKTEHRTVK
YLNNLIEQDHQPIKRRNKFCQSLRTASSTIKGIKTLRGIYKKNRRNGTLFGFSVSTEI
KVLMGITA"
repeat_region 791. .808
/rpt_type=INVERTED
BASE COUNT 277 a 141 c 165 g 225 t
ORIGIN
>>>>LLISS1T 12/1992
Z14022 L.lactis insertion sequence ISS1T. 12/1992
LOCUS LLISS1T 1108 bp DNA linear BCT 15-DEC-1992
DEFINITION L.lactis insertion sequence ISS1T.
ACCESSION Z14022
VERSION Z14022.1 GI:44032
KEYWORDS insertion sequence; insertion sequence ISS1T.
SOURCE Lactococcus lactis.
ORGANISM Lactococcus lactis
Bacteria; Firmicutes; Bacillus/Clostridium group; Streptococcaceae;
Lactococcus.
REFERENCE 1 (bases 86 to 134; 849 to 891)
AUTHORS Gasson,M.J. and Swindell,S.R.
TITLE Molecular rearrangement of lactose plasmid DNA associated with high
frequency aggregation in Lactococcus lactis 712
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1056)
AUTHORS Swindell,S.R.
TITLE Direct Submission
JOURNAL Submitted (08-JUL-1992) S.R. Swindell, Genetics & Microbiology,
Institute of Food Research, Norwich Research Park, Norwich,
Norfolk, NR4 7UA, ENGLAND
FEATURES Location/Qualifiers
source 1. .1108
/organism="Lactococcus lactis"
/strain="Lactococcus lactis 712"
/db_xref="taxon:1358"
/clone="pFI341"
source 111. .867
/organism="Lactococcus lactis"
/insertion_seq=""
/db_xref="taxon:1358"
BASE COUNT 381 a 187 c 204 g 336 t
ORIGIN
>>>>LLISTRA 11/1993
X60594 L.lactis insertion sequence (plasmid pUCL22) gene for transposase. 11/1993
LOCUS LLISTRA 934 bp DNA linear BCT 22-NOV-1993
DEFINITION L.lactis insertion sequence (plasmid pUCL22) gene for transposase.
ACCESSION X60594 S43267
VERSION X60594.1 GI:44033
KEYWORDS insertion sequence; transposase.
SOURCE Lactococcus lactis.
ORGANISM Lactococcus lactis
Bacteria; Firmicutes; Bacillus/Clostridium group; Streptococcaceae;
Lactococcus.
REFERENCE 1 (bases 1 to 934)
AUTHORS Huang,D.C.
TITLE Direct Submission
JOURNAL Submitted (07-AUG-1991) D.C. Huang, Lab de Genetique Microbienne,
Universite' de Caen, Esplanade de la Paix 14032, Caen Cedex, FRANCE
REFERENCE 2 (bases 1 to 934)
AUTHORS Huang,D.C., Novel,M., Huang,X.F. and Novel,G.
TITLE Nonidentity between plasmid and chromosomal copies of ISS1-like
sequences in Lactococcus lactis subsp. lactis CNRZ270 and their
possible role in chromosomal integration of plasmid genes
JOURNAL Gene 118 (1), 39-46 (1992)
MEDLINE 92380489
FEATURES Location/Qualifiers
source 1. .934
/organism="Lactococcus lactis"
/plasmid=""
/strain="Z270"
/db_xref="taxon:1358"
/clone="D472"
source 61. .868
/organism="Lactococcus lactis"
/insertion_seq=""
/db_xref="taxon:1358"
-35_signal 68. .73
-10_signal 90. .95
RBS 121. .126
CDS 134. .814
/note="orf1"
/codon_start=1
/transl_table=11
/protein_id="CAA43047.1"
/db_xref="GI:44034"
/db_xref="SPTREMBL:Q48649"
/translation="MNYFKGKQFQKDVIIVAVGYYLRYNLSYREIQELLYDRGINVCH
TTIYRWVQEYSKVLYHLWKKKNRQSFYSWKMDETYIKIKGRWHYLYRAIDADGLTLDI
WLRKKRNTQAAYAFLKRLHKQFGQPRVIVTDKAPSIGSAFRKLQSNGLYTKTEHRTVK
YLNNLIEQDHRPIKRRNKFYRSLQTASTTIKGMETIRGIYKKNRRNGTLFGFSVSTEI
KVLMGILA"
CDS complement(209. .394)
/note="orf3"
/codon_start=1
/transl_table=11
/protein_id="CAA43049.1"
/db_xref="GI:44036"
/db_xref="SPTREMBL:Q48651"
/translation="MPTTFDFDISFIHFPRIEGLSIFLFPEMIEDFTVFLYPTINSCV
TNINSTIIKEFLNFTIA"
CDS 240. .428
/note="orf2"
/codon_start=1
/transl_table=11
/protein_id="CAA43048.1"
/db_xref="GI:44035"
/db_xref="SPTREMBL:Q48650"
/translation="MIVELMFVTQLFIVGYKNTVKSSIISGKRKIDSPSIRGKWMKLI
SKSKVVGIISIVQLMRMD"
CDS complement(508. .630)
/note="orf4"
/codon_start=1
/transl_table=11
/protein_id="CAA43050.1"
/db_xref="GI:44037"
/db_xref="SPTREMBL:Q48652"
/translation="MRLLRYFTVRCSVLVYKPLLCNFLNAEPIEGALSVTITLG"
BASE COUNT 340 a 150 c 174 g 270 t
ORIGIN
>>>>LLJ000883 11/1998
AJ000883 Lactococcus lactis lactis purDEK operon. 11/1998
LOCUS LLJ000883 3573 bp DNA linear BCT 17-NOV-1998
DEFINITION Lactococcus lactis lactis purDEK operon.
ACCESSION AJ000883
VERSION AJ000883.1 GI:3892881
KEYWORDS purDEK operon.
SOURCE Lactococcus lactis.
ORGANISM Lactococcus lactis
Bacteria; Firmicutes; Bacillus/Clostridium group; Streptococcaceae;
Lactococcus.
REFERENCE 1 (bases 1 to 3573)
AUTHORS Nilsson,D. and Kilstrup,M.
TITLE Cloning and expression of the Lactococcus lactis purDEK genes,
required for growth in milk
JOURNAL Appl. Environ. Microbiol. 64 (11), 4321-4327 (1998)
MEDLINE 99013630
REFERENCE 2 (bases 1 to 3573)
AUTHORS Nilsson,D.
TITLE Direct Submission
JOURNAL Submitted (27-JAN-1998) Nilsson D., Department of Physiology and
Metabolism, Chr. Hansen A/S, Boege Alle 10-12,, DK-2970 Hoersholm,
DENMARK
FEATURES Location/Qualifiers
source 1. .3573
/organism="Lactococcus lactis"
/strain="CHCC373"
/sub_species="lactis"
/db_xref="taxon:1358"
CDS complement(<1. .364)
/note="orf1"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="CAA04373.1"
/db_xref="GI:3892882"
/translation="MATQPTKDKIISSSWELLEELTLTEFSMRKLASAVGMTVSSLYY
HFSSKEALFAELIDKASLEIIFPANEKTWQDRLFVYGKNIYTVLESYPNLAQLMMDYP
PESENYLRLFDKLLMIVDD"
gene join(563. .568,575. .3573)
/gene="purDEK"
-10_signal 563. .568
/gene="purDEK"
/citation=[1]
prim_transcript 575. .>3573
/gene="purDEK"
/citation=[1]
/evidence=experimental
gene 711. .715
/gene="purD"
RBS 711. .715
/gene="purD"
/citation=[1]
gene 720. .1958
/gene="purD"
CDS 720. .1958
/gene="purD"
/codon_start=1
/transl_table=11
/protein_id="CAA04374.1"
/db_xref="GI:3892883"
/translation="MKILVIGSGGREHALAKKFMESPQVEEVFVAPGNSGMEKDGIQI
VHISELSNDKLVKFAQNQNIGLTFVGPETALMNGVVDAFIKAELPIFGPNKMAAELEG
SKDFAKSIMKKYGVPTADYATFDSLEPALAYLDEKGVPLVIKADGLAAGKGVTVAFDI
ETAKSALADIFSGSQGKVVIEEFLDGEEFSLFSFIHDGKIYPMPIAQDHKRAFDEDKG
PNTGGMGAYSPVLHISKEVVNEALEKVVKPTVAGMIEEGKSFTGVLYAGLILTEDGVK
TIEFNARFGDPETQVVLPRLKSDLAQAIIDILAGNEPTLEWLESGVTLGVVVAAEGYP
SQAKLGLILPEIPEGLNVYYAGVSKNENNQLISSGGRVYLVSETGEDVKSTQKLLYEK
LDKLENDGFFYRHDIGSRAI"
gene 1982. .1986
/gene="purE"
RBS 1982. .1986
/gene="purE"
/citation=[1]
gene 1991. .2476
/gene="purE"
CDS 1991. .2476
/gene="purE"
/codon_start=1
/transl_table=11
/protein_id="CAA04375.1"
/db_xref="GI:3892884"
/translation="MAEVAIIMGCSSDWATMKETAKILDDFGLAYEKKVVSAHRTPAL
MAEFSSQARERGYKVIIAGAGGAAHLPGMVSAQTLVPVIGVPIKSRALSGLDSLYSIV
QMPAGVPVATMAIGEAGAKNAALFALQLLANTNENLIQKLLVYRAAAQEMVEESNKAL
L"
gene 2518. .2522
/gene="purK"
RBS 2518. .2522
/gene="purK"
/citation=[1]
gene 2527. .3573
/gene="purK"
CDS 2527. .>3573
/gene="purK"
/codon_start=1
/transl_table=11
/protein_id="CAA04376.1"
/db_xref="GI:3892885"
/translation="MIKNTKQTIGIIGGGQLGQMMAIAAQYMGHKVITLDPNPNCSAA
KVSDELIVAPYDDVENLLRLAYACDVITYEFENVSAKALHEIEGCVRIPQGIRLLEIT
QNRRFEKEFLTNEAKVNVAPWQLVDSAEKLPETVTRKQVLKTTTGGYDGHGQVVLNTD
EKLSAAKSLTELSECVLEDFISFEREISVIISGNGHEYVVFPLAENEHRENILHQTIS
PARISAEITENAYKIATSIAEKLELSGVLCVEMFLTADGQIYVNELAPRPHNSGHFTI
EACDFNQFDLHIKGILGEDLPEPKLLKPAIMLNVLGQHVEAVKKLNHEHADWHQHDYG
KADAKHNRKMGHVTI"
BASE COUNT 1172 a 569 c 753 g 1079 t
ORIGIN
>>>>LLJ002203 8/2000
AJ002203 Lactococcus lactis subsp. lactis plasmid pBL1 DNA for lactococcin 972 operon. 8/2000
LOCUS LLJ002203 2455 bp DNA linear BCT 18-AUG-2000
DEFINITION Lactococcus lactis subsp. lactis plasmid pBL1 DNA for lactococcin
972 operon.
ACCESSION AJ002203
VERSION AJ002203.2 GI:9795227
KEYWORDS lactococcin 972; lcn972; operon.
SOURCE Lactococcus lactis subsp. lactis.
ORGANISM Lactococcus lactis subsp. lactis
Bacteria; Firmicutes; Bacillus/Clostridium group; Streptococcaceae;
Lactococcus.
REFERENCE 1 (bases 1 to 2455)
AUTHORS Martinez,B., Fernandez,M., Suarez,J.E. and Rodriguez,A.
TITLE Synthesis of lactococcin 972, a bacteriocin produced by Lactococcus
lactis IPLA 972, depends on the expression of a plasmid-encoded
bicistronic operon
JOURNAL Microbiology 145 (Pt 11), 3155-3161 (1999)
MEDLINE 20055640
REFERENCE 2 (bases 1 to 2455)
AUTHORS Suarez,J.E.
TITLE Direct Submission
JOURNAL Submitted (26-JAN-1998) Suarez J.E., Microbiologia, Universidad de
Oviedo, Julian Claveria sn, 33006 Oviedo, SPAIN
REMARK Revised by [3]
REFERENCE 3 (bases 1 to 2455)
AUTHORS Martinez,B.
TITLE Direct Submission
JOURNAL Submitted (07-AUG-2000) Martinez B.,Instituto de Productos Lacteos
de Asturias, CSIC Apdo. 85, 33300 Villaviciosa, SPAIN
COMMENT On Aug 11, 2000 this sequence version replaced gi:3355781.
Related sequence AF242367.
FEATURES Location/Qualifiers
source 1. .2455
/organism="Lactococcus lactis subsp. lactis"
/plasmid="pBL1"
/strain="IPLA 972"
/sub_species="lactis"
/db_xref="taxon:1360"
-35_signal 57. .62
/gene="lcn972"
/evidence=experimental
gene 57. .2455
/gene="lcn972"
-10_signal 80. .85
/gene="lcn972"
/evidence=experimental
prim_transcript 93. .456
/gene="lcn972"
/evidence=experimental
prim_transcript 93. .2455
/gene="lcn972"
/note="ORF2"
/evidence=experimental
stem_loop 126. .150
/gene="lcn972"
RBS 166. .171
/gene="lcn972"
CDS 178. .453
/gene="lcn972"
/function="bacteriocin"
/codon_start=1
/transl_table=11
/evidence=experimental
/product="lactococcin 972"
/protein_id="CAA05247.1"
/db_xref="GI:3355782"
/db_xref="SPTREMBL:O86283"
/translation="MKTKSLVLALSAVTLFSAGGIVAQAEGTWQHGYGVSSAYSNYHH
GSKTHSATVVNNNTGRQGKDTQRAGVWAKATVGRNLTEKASFYYNFW"
sig_peptide 178. .252
/gene="lcn972"
mat_peptide 253. .450
/gene="lcn972"
/function="bacteriocin"
/product="lactococcin 972"
terminator 456. .493
/gene="lcn972"
/evidence=experimental
RBS 498. .503
/gene="lcn972"
/note="ORF2"
CDS 509. .2455
/gene="lcn972"
/function="putative immunity"
/note="ORF2"
/codon_start=1
/transl_table=11
/protein_id="CAC03468.1"
/db_xref="GI:9795228"
/translation="MYKKLERVLITLSIVLVSAFSMIIVINKHKQMFAGTNGGVLVLK
AKSNIKESIAEIAKKNNVLIAKQIMVPSTDGKTDNQPTFQKFGNGTLPKDFPEQKNKE
FIEDSNDSVYYFIFGKTLSSIDLSKYLNEKGNTSMVSDNDWRFQGITALLDTRMIVGL
LLFLISYTSILMANIIINLKKQGVQRLAGISCFRLSFLGLKKRLTYIFITTIITLLTS
SLILYIINLRRIMYFYVIIFPTIFIVLVLLLIELIVGILVYLFLQRQKINLVIKDMAP
IRALMSFVFLLQLISLLCLIFSFSSISSSHKDLVLLKKATNKWKSQDYYSPSLLNGNT
EKSKENVLRFLSEANQKEEVLIIADNFNKYPLQNQYFPTSNGNENILYVTPNYLKKVG
IKFNNTMKSDITILVPETEKSRKNKLSTLWSQAFNSLNETSFSYNSSVYKSPSKDLFT
FRIFGWSAVDNQAFVQEPLIVVMSPKLFNINNKNINSDVLFSWFSREQILFSNNKTTA
DLIKKYRLENVLGSFSNGNLSVKNRFVEIKSQQLFIVVTSSIALISSTFLFYLMNKIY
LYQNRKKFAVARISGESLFTTHKTYLIQLFIIIIFAIGMIFIWHLNPLTLIIPPILGG
LQLILLTRQIKNNKTFNISVLKGE"
BASE COUNT 890 a 354 c 350 g 861 t
ORIGIN
>>>>LLJW563RP 11/1995
X85168 L.lactis plasmid pJW563 repB and ORFX genes. 11/1995
LOCUS LLJW563RP 2297 bp DNA linear BCT 10-NOV-1995
DEFINITION L.lactis plasmid pJW563 repB and ORFX genes.
ACCESSION X85168
VERSION X85168.1 GI:728598
KEYWORDS orfX gene; repB gene.
SOURCE Lactococcus lactis.
ORGANISM Lactococcus lactis
Bacteria; Firmicutes; Bacillus/Clostridium group; Streptococcaceae;
Lactococcus.
REFERENCE 1 (bases 1 to 2297)
AUTHORS Gravesen,A., Josephsen,J., von Wright,A. and Vogensen,F.K.
TITLE Characterization of the replicon from the lactococcal
theta-replicating plasmid pJW563
JOURNAL Plasmid 34 (2), 105-118 (1995)
MEDLINE 96117602
REFERENCE 2 (bases 1 to 2297)
AUTHORS Gravesen,A.L.
TITLE Direct Submission
JOURNAL Submitted (07-MAR-1995) A.L. Gravesen, The Royal Veterinary &
Agric. Univ., Dept of Dairy & Food Science, Rolighedsvej 30, 1958
Frederiksberg C, DENMARK
FEATURES Location/Qualifiers
source 1. .2297
/organism="Lactococcus lactis"
/plasmid="pJW563"
/sub_species="cremoris"
/db_xref="taxon:1358"
/clone_lib="pAG34,35,36,37,38,39,40,41,43"
repeat_region 178. .199
/note="DRI"
/rpt_type=DIRECT
repeat_region 257. .337
/note="DRII"
/rpt_type=DIRECT
repeat_region 328. .354
/note="IR1"
/rpt_type=INVERTED
-35_signal 343. .347
-10_signal 365. .370
repeat_region 373. .414
/note="IR2"
/rpt_type=INVERTED
gene join(431. .436,446. .1603)
/gene="repB"
RBS 431. .436
/gene="repB"
CDS 446. .1603
/gene="repB"
/codon_start=1
/transl_table=11
/protein_id="CAA59451.1"
/db_xref="GI:728599"
/db_xref="SPTREMBL:Q48654"
/translation="MEIITKNDRNSNERTVCSLKEIEKRKIVEHNDLITSVAKMDKTP
LKIFELAVSCIDTENLPKDNIIYLSKKELFTFFDVSDNGKHTRFKEAVEKMQKQAFFE
IKEVKGKGYKVKSIVPIPYVEWNSYNDVVTLQFQPQIMPYLIELKKNFTKYALSDIMR
LNSKYSIILYKWLCMFYNQYEHYSVKGGRRAEQVETYRNPSIKISELRSLTDTINEYK
DMSNFTKRVLDNSLKEINHHTSFNVTYDKIKKGRSIDSIVFHIEKKRMADDNSYKLDD
RAYQEDKARKAETEDKLAIEAMKSKYTTLLLENMLLSPFEMQDTKIMAGLQAHVYPLY
DELKALRGLKGVKEHLSYVAAKQEAYSKRNVAKYLKKAIEQYLPTVKRQDL"
gene 1600. .2193
/gene="ORFX"
CDS 1600. .2193
/gene="ORFX"
/codon_start=1
/transl_table=11
/protein_id="CAA59452.1"
/db_xref="GI:728600"
/db_xref="SPTREMBL:Q48655"
/translation="MMSEKLKTIKELADEFNVSKQAVRKRLTEEFRANHVETVTSNGV
KTLVVTYTGYMLLKQHFTTSNATSNDKVTDTSNPTNADLSVVKILEQQLFVKDKQLEN
KDSQISQMQNLLDQQQRLALQDKKLIEEYKSEINELRALKMPQEDMKDGSPIRGEAQE
EIERLKAQLKLSEEERNKEKEKDRVKTESKKWWQLWK"
BASE COUNT 901 a 352 c 441 g 603 t
ORIGIN
>>>>LLL216SRR 5/1998
X97364 L.lyticum 16S rRNA gene, strain L2. 5/1998
LOCUS LLL216SRR 1481 bp DNA linear BCT 06-MAY-1998
DEFINITION L.lyticum 16S rRNA gene, strain L2.
ACCESSION X97364
VERSION X97364.1 GI:1310678
KEYWORDS 16S ribosomal RNA; 16S rRNA.
SOURCE Legionella lytica.
ORGANISM Legionella lytica
Bacteria; Proteobacteria; gamma subdivision; Legionellaceae group;
Legionellaceae; Legionella.
REFERENCE 1 (bases 1 to 1481)
AUTHORS Birtles,R.J., Rowbotham,T.J., Raoult,D. and Harrison,T.G.
TITLE Phylogenetic diversity of intra-amoebal legionellae as revealed by
16S rRNA gene sequence comparison
JOURNAL Microbiology 142 (Pt 12), 3525-3530 (1996)
MEDLINE 97158243
REFERENCE 2 (bases 1 to 1481)
AUTHORS Birtles,R.J.
TITLE Direct Submission
JOURNAL Submitted (19-APR-1996) R.J. Birtles, UNITE DES RICKETTSIES, CNRS
EP J0054, Fac. de Medicine, 27, bd Jean Moulin, F-13385 Marseille
Cedex 5, FRANCE
FEATURES Location/Qualifiers
source 1. .1481
/organism="Legionella lytica"
/strain="L2"
/db_xref="taxon:96232"
rRNA 1. .1481
/gene="16S rRNA"
/product="16S ribosomal RNA"
gene 1. .1481
/gene="16S rRNA"
BASE COUNT 394 a 317 c 468 g 302 t
ORIGIN
>>>>LLL5SRA 2/1999
D90253 Leptonema illini 5S ribosomal RNA gene A. 2/1999
LOCUS LLL5SRA 550 bp DNA linear BCT 07-FEB-1999
DEFINITION Leptonema illini 5S ribosomal RNA gene A.
ACCESSION D90253
VERSION D90253.1 GI:216766
KEYWORDS 5S ribosomal RNA.
SOURCE Leptonema illini (strain:3055) DNA.
ORGANISM Leptonema illini
Bacteria; Spirochaetales; Leptospiraceae; Leptonema.
REFERENCE 1 (bases 1 to 550)
AUTHORS Fukunaga,M., Horie,I., Mifuchi,I. and Takemoto,M.
TITLE Cloning, characterization and taxonomic significance of genes for
the 5S ribosomal RNA of Leptonema illini strain 3055
JOURNAL J. Gen. Microbiol. 137 (Pt 7), 1523-1528 (1991)
MEDLINE 92065221
COMMENT These data kindly submitted in computer readable form by: Masahito
Fukunaga
Faculty of Pharmacy and Pharmaceutical Sciences
Fukuyama University
985 Higashimura-cho, Fukuyama
Hiroshima 729-02
Japan
Phone: 0849-36-2111 x5216
Fax: 0849-36-2213.
FEATURES Location/Qualifiers
source 1. .550
/organism="Leptonema illini"
/strain="3055"
/db_xref="taxon:183"
-35_signal 216. .221
-10_signal 239. .243
rRNA 251. .357
/note="5S ribosomal RNA gene A"
BASE COUNT 125 a 148 c 127 g 150 t
ORIGIN 28 bp upstream of PvuII site.
>>>>LLL5SRB 2/1999
D90254 Leptonema illini 5S ribosomal RNA gene B. 2/1999
LOCUS LLL5SRB 550 bp DNA linear BCT 07-FEB-1999
DEFINITION Leptonema illini 5S ribosomal RNA gene B.
ACCESSION D90254
VERSION D90254.1 GI:216767
KEYWORDS 5S ribosomal RNA.
SOURCE Leptonema illini (strain:3055) DNA.
ORGANISM Leptonema illini
Bacteria; Spirochaetales; Leptospiraceae; Leptonema.
REFERENCE 1 (bases 1 to 550)
AUTHORS Fukunaga,M., Horie,I., Mifuchi,I. and Takemoto,M.
TITLE Cloning, characterization and taxonomic significance of genes for
the 5S ribosomal RNA of Leptonema illini strain 3055
JOURNAL J. Gen. Microbiol. 137 (Pt 7), 1523-1528 (1991)
MEDLINE 92065221
COMMENT These data kindly submitted in computer readable form by: Masahito
Fukunaga
Faculty of Pharmacy and Pharmaceutical Sciences
Fukuyama University
985 Higashimura-cho, Fukuyama
Hiroshima 729-02
Japan
Phone: 0849-36-2111 x5216
Fax: 0849-36-2213.
FEATURES Location/Qualifiers
source 1. .550
/organism="Leptonema illini"
/strain="3055"
/db_xref="taxon:183"
-35_signal 216. .221
-10_signal 239. .243
rRNA 251. .357
/note="5S ribosomal RNA gene B"
BASE COUNT 123 a 145 c 117 g 165 t
ORIGIN 38 bp upstream of StuI site.
>>>>LLLACA 4/1996
X81358 L.lactis lacA gene. 4/1996
LOCUS LLLACA 784 bp DNA linear BCT 15-APR-1996
DEFINITION L.lactis lacA gene.
ACCESSION X81358
VERSION X81358.1 GI:1263134
KEYWORDS galactoside O-acetyltransferase; lacA gene.
SOURCE Lactococcus lactis.
ORGANISM Lactococcus lactis
Bacteria; Firmicutes; Bacillus/Clostridium group; Streptococcaceae;
Lactococcus.
REFERENCE 1 (bases 1 to 784)
AUTHORS Griffin,H.G. and Gasson,M.J.
TITLE The gene (1acA) encoding galactoside acetyltransferase from
Lactococcus lactis
JOURNAL Biotechnol. Lett. 16, 1125-1130 (1994)
REFERENCE 2 (bases 1 to 784)
AUTHORS Griffin,H.G.
TITLE Direct Submission
JOURNAL Submitted (02-SEP-1994) H.G. Griffin, Institute of Food Research,
Norwich Research Park, Colney, Norwich NR4 7UA, UK
COMMENT Related sequence: X80037.
FEATURES Location/Qualifiers
source 1. .784
/organism="Lactococcus lactis"
/strain="ATCC7962"
/db_xref="taxon:1358"
RBS 10. .16
gene 25. .648
/gene="lacA"
CDS 25. .648
/gene="lacA"
/EC_number="2.3.1.18"
/codon_start=1
/transl_table=11
/product="galactoside O-acetyltransferase"
/protein_id="CAA57126.1"
/db_xref="GI:1263135"
/db_xref="SWISS-PROT:P52984"
/translation="MPKLESYKRVHTEELYFPNDQKLWKEQQEALVLLEKFNQTSVTQ
PEQQMELLKKMFSEIGENCFIQPPFYANFGGKNVHFGTGIYANFNLTLVDDTDIFVGN
HVMFGPNVTIDTATHPVSPDLRKRGAQYNKKVYIEENVWLGAGVIVLPGVRIGKNSVI
GAGSLVTKDIPDNVVAFGTPCMVKRKINDSDFKTYDHGKKIDLDEFI"
BASE COUNT 273 a 109 c 163 g 239 t
ORIGIN
>>>>LLLACZ 10/1996
X80037 Lactococcus lactis lacZ gene. 10/1996
LOCUS LLLACZ 3071 bp DNA linear BCT 07-OCT-1996
DEFINITION Lactococcus lactis lacZ gene.
ACCESSION X80037
VERSION X80037.1 GI:1556405
KEYWORDS beta-D-galactosidase; lacz gene.
SOURCE Lactococcus lactis.
ORGANISM Lactococcus lactis
Bacteria; Firmicutes; Bacillus/Clostridium group; Streptococcaceae;
Lactococcus.
REFERENCE 1 (bases 1 to 3071)
AUTHORS Griffin,H.G., MacCormick,C.A. and Gasson,M.J.
TITLE Cloning and analysis of a gene expressing a temperature-sensitive
beta-galactosidase from lactococcus lactis
JOURNAL DNA Seq. In press
REFERENCE 2 (bases 1 to 3071)
AUTHORS Griffin,H.G.
TITLE Direct Submission
JOURNAL Submitted (05-JUL-1994) H.G. Griffin, Institute of Food Research,
Norwich Research Park, Colney, Norwich NR4 7UA, UK
FEATURES Location/Qualifiers
source 1. .3071
/organism="Lactococcus lactis"
/strain="ATCC7962"
/db_xref="taxon:1358"
RBS 24. .30
/gene="lacZ"
gene 24. .3027
/gene="lacZ"
CDS 37. .3027
/gene="lacZ"
/codon_start=1
/transl_table=11
/product="beta-D-galactosidase"
/protein_id="CAA56341.1"
/db_xref="GI:1556406"
/db_xref="SWISS-PROT:Q48727"
/translation="MMTMIDVLERKDWENPVVSNWNRLPMHTPMDFLEKQSLNGLWNF
DHFSRISDVPKNWLELTESKTEIIVPSNWQIEFKDKSDVPIYTNVTYPIPIQPPYVPE
ANPVGAYSRYFDITKEWLESGHVHLTFEGVGSAFHFWLNGEYGGYSEDSRLPAEFDIS
NLAKEGQNCLKVLVFRWSKGTYFEDQDMWRMSGIFRSVNLQWLPDNYLLDFSIKTDLD
EDLDFANVKLQAYAKNMDDACLEFKLYDDEQLIGECHGFDAEIGVVNPKLWSDEIPYL
YRLELTLMDRSGAVFHKETKKIGIRKIAIEKGQLKINGKALLVRGVNKHEFTPEHGYV
VSEEVMIKDIKLMKEHNFNAVRCSHYPNDSRWYELCDEYGLYVMDEANIETHGMTPMN
RLTNDPTYLPLMSERVTRMVMRDRNHPSIIIWSLGNESGYGSNHQALYDWCKSFDSSR
PVHYEGGDDASRGATDATDIICPMYARVDSPSINAPYSLKTWMGVAGENRPLILCEYA
HDMGNSLGGFGKYWQAFREIDRLQGGFIWDWVDQGLLKDGNYAYGGDFGDKPNDRQFS
LNGLVFPNRQAKPALREAKYWQQYYQFELEKTPLGQVFAFTVTNEYLFRSTDNEKLCY
QLTNGLEVLWENELILNMPAGGSMRIDLSELPIDGTDNLFLNIQVKTIEKYNLLESDF
EVAHQQFVLQEKINFTDKIDSNEEITLLEDEELLTVRSAKQKFIFNKSNGNLSRWLDE
KGNEKLLHELSEQFTRAPLDNDIGVSEVEHIDPNAWLERWKAVGFYELKTLLKNMIIQ
ATENEVIISVQTDYEAKGKIAFSTIREYHIFRNGELLLKVDFKRNIEFPEPARIGLSL
QLAEKAENVTYFGLGPDENYPDRRGASLFGQWNLRITDMTTPYIFPSENGLRMETREL
NYGRLKVRAMGQSFAFNLSPYSQNQLAKKGHWHLLEEEAGTWLNIDGFHMGVGGDDSW
SPSVAQEYLLTKGNYHYEVSFKLT"
BASE COUNT 1020 a 430 c 667 g 954 t
ORIGIN
>>>>LLLCPJ 9/1996
X89503 L.lactis DNA for lcp J gene. 9/1996
LOCUS LLLCPJ 400 bp DNA linear BCT 11-SEP-1996
DEFINITION L.lactis DNA for lcp J gene.
ACCESSION X89503
VERSION X89503.1 GI:1536913
KEYWORDS bacteriocin J46; lcp J gene.
SOURCE Lactococcus lactis.
ORGANISM Lactococcus lactis
Bacteria; Firmicutes; Bacillus/Clostridium group; Streptococcaceae;
Lactococcus.
REFERENCE 1 (bases 1 to 400)
AUTHORS Huot,E., Meghrous,J., Barrena-Gonzalez,C. and Petitdemange,H.
TITLE Bacteriocin J46, a new bacteriocin produced by Lactococcus lactis
subsp. cremoris J46 : isolation and characterization of the protein
and its gene
JOURNAL Anaerobe 2, 137-145 (1996)
REFERENCE 2 (bases 1 to 400)
AUTHORS Petitdemange,H.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-1995) H. Petitdemange, Laboratoire de chimie
biologique 1, Boulevard des Aiguillettes, BP 239 Faculte des
Sciences, F- 54506 Vandoeuvre-Les-Nancy Cedex, FRANCE
FEATURES Location/Qualifiers
source 1. .400
/organism="Lactococcus lactis"
/strain="J46"
/sub_species="cremoris"
/db_xref="taxon:1358"
gene 62. .351
/gene="lcp J"
-35_signal 62. .67
/gene="lcp J"
TATA_signal 85. .90
/gene="lcp J"
RBS 132. .135
/gene="lcp J"
CDS 145. .300
/gene="lcp J"
/codon_start=1
/transl_table=11
/product="bacteriocin J46"
/protein_id="CAA61674.1"
/db_xref="GI:1536914"
/db_xref="SPTREMBL:P71449"
/translation="MKEQNSFNLLQEVTESELDLILGAKGGSGVIHTISHEVIYNSWN
FVFTCCS"
sig_peptide 145. .216
/gene="lcp J"
terminator 328. .351
/gene="lcp J"
BASE COUNT 145 a 51 c 69 g 135 t
ORIGIN
>>>>LLLCT 9/1993
X71410 L.lactis gene for lacticin 481. 9/1993
LOCUS LLLCT 1345 bp DNA linear BCT 24-SEP-1993
DEFINITION L.lactis gene for lacticin 481.
ACCESSION X71410
VERSION X71410.1 GI:296368
KEYWORDS lacticin; lantibiotic; lct gene; structural gene.
SOURCE Lactococcus lactis.
ORGANISM Lactococcus lactis
Bacteria; Firmicutes; Bacillus/Clostridium group; Streptococcaceae;
Lactococcus.
REFERENCE 1 (bases 1 to 1345)
AUTHORS Piard,J.
TITLE Direct Submission
JOURNAL Submitted (13-APR-1993) J. Piard, Lab de Genetique Microbienne,
Institut de Biotechnologie, INRA, 78350 Jouy en Josas, FRANCE
REFERENCE 2 (bases 1 to 1345)
AUTHORS Piard,J.C., Kuipers,O.P., Rollema,H.S., Desmazeaud,M.J. and de
Vos,W.M.
TITLE Structure, organization, and expression of the lct gene for
lacticin 481, a novel lantibiotic produced by Lactococcus lactis
JOURNAL J. Biol. Chem. 268 (22), 16361-16368 (1993)
MEDLINE 93346379
FEATURES Location/Qualifiers
source 1. .1345
/organism="Lactococcus lactis"
/strain="CNRZ481"
/sub_species="lactis"
/db_xref="taxon:1358"
-35_signal 729. .734
-10_signal 752. .757
mRNA 764. .>1345
RBS 798. .801
/note="putative"
gene 811. .966
/gene="lct"
sig_peptide 811. .882
/gene="lct"
CDS 811. .966
/gene="lct"
/codon_start=1
/transl_table=11
/protein_id="CAA50534.1"
/db_xref="GI:296369"
/db_xref="SWISS-PROT:P36499"
/translation="MKEQNSFNLLQEVTESELDLILGAKGGSGVIHTISHECNMNSWQ
FVFTCCS"
mat_peptide 883. .963
/gene="lct"
/product="lacticin 481"
repeat_region 994. .1017
/note="putative rho-independant transcription terminator"
/rpt_type=INVERTED
BASE COUNT 487 a 185 c 219 g 454 t
ORIGIN
>>>>LLLLAP316 5/1998
X97358 L.lyticum 16S rRNA gene, strain LLAP3. 5/1998
LOCUS LLLLAP316 1466 bp DNA linear BCT 06-MAY-1998
DEFINITION L.lyticum 16S rRNA gene, strain LLAP3.
ACCESSION X97358
VERSION X97358.1 GI:1310679
KEYWORDS 16S ribosomal RNA; 16S rRNA.
SOURCE Legionella lytica.
ORGANISM Legionella lytica
Bacteria; Proteobacteria; gamma subdivision; Legionellaceae group;
Legionellaceae; Legionella.
REFERENCE 1 (bases 1 to 1466)
AUTHORS Birtles,R.J., Rowbotham,T.J., Raoult,D. and Harrison,T.G.
TITLE Phylogenetic diversity of intra-amoebal legionellae as revealed by
16S rRNA gene sequence comparison
JOURNAL Microbiology 142 (Pt 12), 3525-3530 (1996)
MEDLINE 97158243
REFERENCE 2 (bases 1 to 1466)
AUTHORS Birtles,R.J.
TITLE Direct Submission
JOURNAL Submitted (19-APR-1996) R.J. Birtles, UNITE DES RICKETTSIES, CNRS
EP J0054, Fac. de Medicine, 27, bd Jean Moulin, F-13385 Marseille
Cedex 5, FRANCE
FEATURES Location/Qualifiers
source 1. .1466
/organism="Legionella lytica"
/strain="LLAP3"
/db_xref="taxon:96232"
rRNA 1. .1466
/gene="16S rRNA"
/product="16S ribosomal RNA"
gene 1. .1466
/gene="16S rRNA"
BASE COUNT 387 a 316 c 463 g 300 t
ORIGIN
>>>>LLLMRP 11/1995
X89779 L.lactis DNA for LmrP gene. 11/1995
LOCUS LLLMRP 2019 bp DNA linear BCT 06-NOV-1995
DEFINITION L.lactis DNA for LmrP gene.
ACCESSION X89779
VERSION X89779.1 GI:1052753
KEYWORDS integral membrane protein; lmrP gene.
SOURCE Lactococcus lactis.
ORGANISM Lactococcus lactis
Bacteria; Firmicutes; Bacillus/Clostridium group; Streptococcaceae;
Lactococcus.
REFERENCE 1 (bases 1 to 2019)
AUTHORS Bolhuis,H., Poelarends,G., van Veen,H.W., Poolman,B., Driessen,A.J.
and Konings,W.N.
TITLE The Lactococcal lmrP gene encodes a proton motive force-dependent
drug transporter
JOURNAL J. Biol. Chem. 270 (44), 26092-26098 (1995)
MEDLINE 96064673
REFERENCE 2 (bases 1 to 2019)
AUTHORS Bolhuis,H.
TITLE Direct Submission
JOURNAL Submitted (12-JUL-1995) H. Bolhuis, University of Groningen,
Department of Microbiology, Kerklaan 30, NL-9751 NN Haren,
NETHERLANDS
FEATURES Location/Qualifiers
source 1. .2019
/organism="Lactococcus lactis"
/strain="MG1363"
/sub_species="lactis"
/db_xref="taxon:1358"
-35_signal 417. .422
-10_signal 439. .444
RBS 625. .628
gene 634. .1860
/gene="lmrP"
CDS 634. .1860
/gene="lmrP"
/codon_start=1
/transl_table=11
/product="LmrP integral membrane protein"
/protein_id="CAA61918.1"
/db_xref="GI:1052754"
/db_xref="SPTREMBL:Q48658"
/translation="MKEFWNLDKNLQLRLGIVFLGAFSYGTVFSSMTIYYNQYLGSAI
TGILLALSAVATFVAGILAGFFADRNGRKPVMVFGTIIQLLGAALAIASNLPGHVNPW
STFIAFLLISFGYNFVITAGNAMIIDASNAENRKVVFMLDYWAQNLSVILGAALGAWL
FRPAFEALLVILLLTVLVSFFLTTFVMTETFKPTVKVDEKAENIFQAYKTVLQDKTYM
IFMGANIATTFIIMQFDNFLPVHLSNSFKTITFWGFEIYGQRMLTIYLILACVLVVLL
MTTLNRLTKDWSHQKGFIWGSLFMAIGMIFSFLTTTFTPIFIAGIVYTLGEIVYTPSV
QTLGADLMNPEKIGSYNGVAAIKMPIASILAGLLVSISPMIKAIGVSLVLALTEVLAI
ILVLVAVNRHQKTKLN"
terminator 1888. .1910
BASE COUNT 633 a 286 c 349 g 751 t
ORIGIN
>>>>LLLNISZ 10/1999
Y13384 Lactococcus lactis nisZ gene and 3 ORF's. 10/1999
LOCUS LLLNISZ 2778 bp DNA linear BCT 27-OCT-1999
DEFINITION Lactococcus lactis nisZ gene and 3 ORF's.
ACCESSION Y13384
VERSION Y13384.1 GI:3157416
KEYWORDS Nisin Z; NisZ gene.
SOURCE Lactococcus lactis subsp. lactis.
ORGANISM Lactococcus lactis subsp. lactis
Bacteria; Firmicutes; Bacillus/Clostridium group; Streptococcaceae;
Lactococcus.
REFERENCE 1 (bases 1 to 2778)
AUTHORS Immonen,T., Wahlstrom,G., Takala,T. and Saris,P.E.
TITLE Evidence for a mosaic structure of the Tn5481 in Lactococcus lactis
N8
JOURNAL DNA Seq. 9 (5-6), 245-261 (1998)
MEDLINE 99452384
REFERENCE 2 (bases 1 to 2778)
AUTHORS Immonen,T.
TITLE Direct Submission
JOURNAL Submitted (27-MAY-1997) T. Immonen, Institute Of Biotechnology,
Biocenter 1, Viikinkaari 9, P.O.Box 56, 00014 University Of
Helsinki, FINLAND
FEATURES Location/Qualifiers
source 1. .2778
/organism="Lactococcus lactis subsp. lactis"
/strain="N8"
/db_xref="taxon:1360"
/clone="pLEB506"
/clone="pLEB461"
/clone="pLEB462"
/clone="pLEB41"
/clone="pLEB43"
CDS complement(<1. .423)
/codon_start=1
/transl_table=11
/product="homologous to branched chain amino acid
transporters of LIV-II class"
/protein_id="CAA73811.1"
/db_xref="GI:3157417"
/db_xref="SPTREMBL:O69437"
/translation="MEEKLAGKDYLFIGSMLFGLFFGAGNLIFPIHMGQEAGAAISQA
NFGFLITAVGFPFLGIIALGISQSNGVFELASRVNRIYAYIFTILLYLVIGPFFALPR
LATTSFEIGISPFLSHELQAPLLALFSILFFGTAWFLSR"
CDS complement(660. .977)
/codon_start=1
/transl_table=11
/product="YjdJ-like protein"
/protein_id="CAA73812.1"
/db_xref="GI:3157418"
/db_xref="SPTREMBL:O69438"
/translation="MPFWSTKIFGEGEKLMNIIERENLFELLSDKGEIIGEMAYMPMN
NSIIITHTGVSLDYRGQGLAKKLVLAGIQKARREQLKLGATCPYAVKYFREHKEELTD
VLK"
CDS complement(932. .1204)
/codon_start=1
/transl_table=11
/product="YjdI-like protein"
/protein_id="CAA73813.1"
/db_xref="GI:3157419"
/db_xref="SPTREMBL:O69439"
/translation="MDNSKLFGEAANEEQLLKNDYRKYCGENMDIYYNVAICEHAGEC
VRGNPLVFEVSRKPWIIPDNGDVASNQSVINRCPSGALKYLAKEKN"
gene 2605. .2778
/gene="nisZ"
CDS 2605. .2778
/gene="nisZ"
/codon_start=1
/transl_table=11
/product="nisin Z"
/protein_id="CAA73814.1"
/db_xref="GI:3157420"
/translation="MSTKDFNLDLVSVSKKDSGASPRITSISLCTPGCKTGALMGCNM
KTATCNCSIHVSK"
BASE COUNT 1020 a 399 c 436 g 923 t
ORIGIN
|