/usr/share/EMBOSS/test/embl/vrt.dat is in emboss-test 6.4.0-2.
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XX
AC L07770;
XX
DT 12-DEC-1992 (Rel. 34, Created)
DT 17-APR-2005 (Rel. 83, Last updated, Version 8)
XX
DE Xenopus laevis rhodopsin mRNA, complete cds.
XX
KW G protein-coupled receptor; phototransduction protein; retinal protein;
KW rhodopsin; transmembrane protein.
XX
OS Xenopus laevis (African clawed frog)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus;
OC Xenopus.
XX
RN [1]
RP 1-1684
RA Knox B.E., Scalzetti L.C., Batni S., Wang J.Q.;
RT "Molecular cloning of the abundant rhodopsin and transducin from Xenopus
RT laevis";
RL Unpublished.
XX
RN [2]
RP 1-1684
RX DOI; 10.1074/jbc.271.6.3179.
RX PUBMED; 8621718.
RA Batni S., Scalzetti L., Moody S.A., Knox B.E.;
RT "Characterization of the Xenopus rhodopsin gene";
RL J. Biol. Chem. 271(6):3179-3186(1996).
XX
FH Key Location/Qualifiers
FH
FT source 1..1684
FT /organism="Xenopus laevis"
FT /mol_type="mRNA"
FT /dev_stage="adult"
FT /tissue_lib="lambda-ZAPII"
FT /tissue_type="retina"
FT /db_xref="taxon:8355"
FT CDS 110..1174
FT /codon_start=1
FT /product="rhodopsin"
FT /note="gene accession number U23808"
FT /db_xref="GOA:P29403"
FT /db_xref="InterPro:IPR000276"
FT /db_xref="InterPro:IPR000732"
FT /db_xref="InterPro:IPR001760"
FT /db_xref="InterPro:IPR017452"
FT /db_xref="InterPro:IPR019477"
FT /db_xref="UniProtKB/Swiss-Prot:P29403"
FT /protein_id="AAC42232.1"
FT /translation="MNGTEGPNFYVPMSNKTGVVRSPFDYPQYYLAEPWQYSALAAYMF
FT LLILLGLPINFMTLFVTIQHKKLRTPLNYILLNLVFANHFMVLCGFTVTMYTSMHGYFI
FT FGQTGCYIEGFFATLGGEVALWSLVVLAVERYMVVCKPMANFRFGENHAIMGVAFTWIM
FT ALSCAAPPLFGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFIVHFTIPLIVIFFC
FT YGRLLCTVKEAAAQQQESATTQKAEKEVTRMVVIMVVFFLICWVPYAYVAFYIFTHQGS
FT NFGPVFMTVPAFFAKSSAIYNPVIYIVLNKQFRNCLITTLCCGKNPFGDEDGSSAATSK
FT TEASSVSSSQVSPA"
FT misc_feature 189..1684
FT /note="sequenced from clone pXOP71"
FT variation 1224
FT /note="clone pX0P5 contained deletion from bp 1224-1534"
XX
SQ Sequence 1684 BP; 426 A; 431 C; 339 G; 488 T; 0 other;
ggtagaacag cttcagttgg gatcacaggc ttctagggat cctttgggca aaaaagaaac 60
acagaaggca ttctttctat acaagaaagg actttataga gctgctacca tgaacggaac 120
agaaggtcca aatttttatg tccccatgtc caacaaaact ggggtggtac gaagcccatt 180
cgattaccct cagtattact tagcagagcc atggcaatat tcagcactgg ctgcttacat 240
gttcctgctc atcctgcttg ggttaccaat caacttcatg accttgtttg ttaccatcca 300
gcacaagaaa ctcagaacac ccctaaacta catcctgctg aacctggtat ttgccaatca 360
cttcatggtc ctgtgtgggt tcacggtgac aatgtacacc tcaatgcacg gctacttcat 420
ctttggccaa actggttgct acattgaagg cttctttgct acacttggtg gtgaagtggc 480
cctctggtca ctggtagtat tggccgttga aagatatatg gtggtctgca agcccatggc 540
caacttccga ttcggggaga accatgctat tatgggtgta gccttcacat ggatcatggc 600
tttgtcttgt gctgctcctc ctctcttcgg atggtccaga tacatcccag agggaatgca 660
atgctcatgc ggagtagact actacacact gaagcctgag gtcaacaatg aatcctttgt 720
tatctacatg ttcattgtcc acttcaccat tcccctgatt gtcatcttct tctgctatgg 780
tcgcctgctc tgcactgtca aagaggctgc agcccagcaa caggaatctg ctaccaccca 840
gaaggctgag aaagaggtca ccagaatggt tgttatcatg gtcgttttct tcctgatctg 900
ttgggtgccc tatgcctatg tggcattcta catcttcacc caccagggct ctaactttgg 960
cccagtcttc atgaccgtcc cagctttctt tgccaagagc tctgctatct acaatcctgt 1020
catctacatt gtcttgaaca aacagttccg taactgcttg atcaccaccc tgtgctgtgg 1080
aaagaatcca ttcggtgatg aagatggctc ctctgcagcc acctccaaga cagaagcttc 1140
ttctgtctct tccagccagg tgtctcctgc ataagagctt caccagggct gtctcagggt 1200
ccgctgcctc acacaattcc catcacttaa gccctgtcta cttgttgcga aggcaaagaa 1260
ttccacagtt ttaatattta cccccattct gcccaacctt ggacactgta agagctgacc 1320
ccattactgc tgggaaggcc caagctttgt tgcattctga tgtgatcctt tcagcagaaa 1380
atgggtggat tcaatgaatt tcaccaaggc tgtacataac aataacatta gtctgaaggc 1440
acctcccacc cagagaatgc aacacttatt tatctctgtc ttttcttgac atattgatgc 1500
tgcttctatt catggtcact aacaaaaagt cccattttac aatgcaactg aaagtaatgt 1560
atttttgtaa tataataaca tatttcatgc aatctcctct gcttattggc aaggtctgat 1620
atagtgagga tagacagcca gaccccttgc attaaaatcc tgtattaaaa atttctttgc 1680
aagt 1684
//
ID U23808; SV 2; linear; genomic DNA; STD; VRT; 8914 BP.
XX
AC U23808;
XX
DT 23-APR-1995 (Rel. 43, Created)
DT 21-APR-2006 (Rel. 87, Last updated, Version 9)
XX
DE Xenopus laevis rhodopsin gene, complete cds.
XX
KW .
XX
OS Xenopus laevis (African clawed frog)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus;
OC Xenopus.
XX
RN [1]
RP 1-8914
RX DOI; 10.1074/jbc.271.6.3179.
RX PUBMED; 8621718.
RA Batni S., Scalzetti L., Moody S.A., Knox B.E.;
RT "Characterization of the Xenopus rhodopsin gene";
RL J. Biol. Chem. 271(6):3179-3186(1996).
XX
RN [2]
RP 1-8914
RA Batni S., Scalzetti L., Knox B.E.;
RT ;
RL Submitted (30-MAR-1995) to the EMBL/GenBank/DDBJ databases.
RL Barry E. Knox, Biochemistry and Molecular Biology, SUNY HSC at Syracuse,
RL 750 E. Adams St., Syracuse, NY 13210, USA
XX
RN [3]
RC Sequence update by submitter
RP 1-8914
RA Batni S., Scalzetti L., Knox B.E.;
RT ;
RL Submitted (20-APR-2006) to the EMBL/GenBank/DDBJ databases.
RL Barry E. Knox, Biochemistry and Molecular Biology, SUNY HSC at Syracuse,
RL 750 E. Adams St., Syracuse, NY 13210, USA
XX
CC On Apr 20, 2006 this sequence version replaced gi:773645.
XX
FH Key Location/Qualifiers
FH
FT source 1..8914
FT /organism="Xenopus laevis"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:8355"
FT promoter 5128..5360
FT misc_feature 5128..5158
FT /note="XOP4 cis element"
FT misc_feature 5191..5215
FT /note="XOP3 cis element"
FT misc_feature 5225..5239
FT /note="Ret1 cis element"
FT misc_feature 5254..5270
FT /note="Bat1 cis element"
FT misc_feature 5277..5302
FT /note="NRE cis element"
FT misc_feature 5309..5318
FT /note="Ret4 cis element"
FT mRNA join(5361..5830,6079..6247,6849..7014,7265..7504,
FT 8210..8867)
FT /product="rhodopsin"
FT CDS join(5470..5830,6079..6247,6849..7014,7265..7504,
FT 8210..8338)
FT /codon_start=1
FT /product="rhodopsin"
FT /note="cDNA sequence deposited under GenBank Accession
FT Number L07770"
FT /db_xref="GOA:P29403"
FT /db_xref="InterPro:IPR000276"
FT /db_xref="InterPro:IPR000732"
FT /db_xref="InterPro:IPR001760"
FT /db_xref="InterPro:IPR017452"
FT /db_xref="InterPro:IPR019477"
FT /db_xref="UniProtKB/Swiss-Prot:P29403"
FT /protein_id="AAC59901.1"
FT /translation="MNGTEGPNFYVPMSNKTGVVRSPFDYPQYYLAEPWQYSALAAYMF
FT LLILLGLPINFMTLFVTIQHKKLRTPLNYILLNLVFANHFMVLCGFTVTMYTSMHGYFI
FT FGQTGCYIEGFFATLGGEVALWSLVVLAVERYMVVCKPMANFRFGENHAIMGVAFTWIM
FT ALSCAAPPLFGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFIVHFTIPLIVIFFC
FT YGRLLCTVKEAAAQQQESATTQKAEKEVTRMVVIMVVFFLICWVPYAYVAFYIFTHQGS
FT NFGPVFMTVPAFFAKSSAIYNPVIYIVLNKQFRNCLITTLCCGKNPFGDEDGSSAATSK
FT TEASSVSSSQVSPA"
XX
SQ Sequence 8914 BP; 2521 A; 1879 C; 1845 G; 2668 T; 1 other;
ggatccatgt tagtagcctt caaatcgagt ttagtctaat ttgaatcaaa ttcgataaga 60
gttttcaagt cagcaaaaat tgtacgagtt ttagatgtcc aatttttttt tctataagta 120
atttagagta tattcgaatt taatcgagtt taaaaaaatt cacattaatt ccaaattcga 180
cctttaatca atgtgcctcc caggatgagt gccagactat gaactcctcc aacctattta 240
ttcatcaacc agatttgaca gtgggagacc taagaatcca gtgattgaat gagtttaatg 300
catgaaaagg ttggcttggt tatttgcagc acagagagaa accaataagg agaaagtaga 360
gttgaggtgg gacattcatg aatactcacc taaaggactt tgattgggat tcagccaata 420
atatcccatc caccacattt actgagctta gaacattctc caaacatgag cagtaaaggg 480
acaaagagta atggctttaa aggagaacta aaccctaaaa ctgaatgtgt aaaaatgtta 540
tattttatag acagaactta ttgcaccagc ctaagtttca gcttgtcaat agcagcaatg 600
atccagaact tcaaacttgt cacagggggt caccatcttg gacagtgtct gtgacactca 660
catgctcagt gggctctgag cagctgttga gaagctaagc ttaggggtcg tcactaatta 720
tccagcagaa aatgaggttg gtctgtaata aaagctgatg ctacagggct taaattctga 780
tgctaattgc actggtttct gtgctgccat gtagtaatta tctgtattaa ttactaatca 840
gccttatatt gtgacatttc tgttctatgt gtactgtata ttgtgagtgg gtccctaagc 900
tcagtaagtg acagcagcac agagcatgtg cagtgaatca gcagaaaaga agacggggag 960
ctactggggc atctttggag acacagatct ttactgctaa agggctgtgg ttgcattggg 1020
ctggtacaga agcccaaaac ataatgtaca acatttctat ctaattcttt agttaagctt 1080
tagttctcca ttaagtgtgc gtccatgttc tacatgcagg agatgcacat gcatagaatg 1140
aaactgataa gtaaatttag gcaaatattt tgaacttgag attctggact gaccttctta 1200
accaatgatt ccataggtgc atatgggaga tctttgacag cgggtattgt cactatagga 1260
tagaaactcc acctcccttc tgatgatttg tgagctaact gatgtttggt catattcatg 1320
taagaacgac tactccgcat gttatttggc tgctctgcaa atgcaatagc agcatgaaag 1380
gtgtagtggt gtcaggctga ggaggagtag cacatttgta ctgtgcctgc atgtgtcttc 1440
aaaggaagaa gatgaagaag ggactgaaga agtccagaga aatgagatgt taaatgttgc 1500
aacacaaacc aactggagtt ttattccttt cacaaaaaca tgtaagattt ggggcagttc 1560
ttaaaaataa gtcttgttta atttaccctg gtctccataa ctgtcttgac ccaagttgat 1620
gatccaacag caggagcccg tgttgaagga tgacaattac aaatcacaag atgactgtag 1680
tgatgggcga atctgacccg tttggcttta ccgaaaattt gggaaatgaa aatttgctaa 1740
aattcattgg gcgtgatttt ttgatgtgtg acaatttttt tcacccattg cagtctatgg 1800
gcatcctttt aagctttgaa acttgacgaa aaattttgct catgactatg atgggttatg 1860
aatcaagggg ggattaggtt tcatattgtc cttccttcat tctactgacg tggaaggaaa 1920
agccaaggtg tgtgcacctt ctaccttggc tgataacacc atcatcggcc ataatcatcc 1980
atctaaatat ttataggaat gctatgcaga ttattaattt aagatccttc accccaataa 2040
cttcaactac atacccatgc agaaatagcc atacatgtat tacatatgag cagcctagaa 2100
tatgaattac tgtatttgga gtctggaata actggttctt aagtgaaagc tataggactt 2160
gatgcatcaa ttcttttgtg gttatcccta taaaagtacc acttcactat tgtacctgtt 2220
tggctaaact ctcaataata ctgaaaatgt tgccatatca gagtcgggtg tcacaatgtc 2280
aggcatcttt acaattctct gcatcagagg acaaaaagga ggaaccattt ttgcacccat 2340
tgtgcctagg gttgccacct gaccagtatt ttaccagcct ggctggtaaa aatgatggtt 2400
gatcccaatg ttattaatag ggaaaacaga taaatatata ggaaggccgg tattttatcc 2460
agaaaaggtg gcgaccctaa ttgtgccctc tgaaggtccc actgccctgg tgtgtatgcc 2520
catttactgt gccctttacc cttcccacca ggaatgtcca acctgcaaca ctccagagga 2580
tgttgctata caactcccag catatagtga tgggtgaatt tgcgccgttt cgcttcgccg 2640
aaaaatgtgc gaatttccca ctaaatggcg tataattcac aaaactgcac cggcgtctcg 2700
tttttgatgc tggcgtccgt tttttttacg ccgatgcccg tttttgatgc cgatgcctgt 2760
ttttaacgcc agcgtccgtt tttttggacg cctgtgacaa tttttttgac gcccatttcg 2820
caaatttatt caccggcggc gaatcacgca aattcgccac aaatttgcgc ctggcgaata 2880
aattcgccca tcactacaca ggagtcagta gctattgatg ggatgctgct agttgtagag 2940
caacaaccta tgttggttca ttgattgtct atctgtgatt ctggtacatg aaacatcact 3000
ctcatagtct ctccctgtgc aatcacagtg gccttgtttc ctgttagact gcaagctctt 3060
ggaccttgca gaactgttcc ctcctgctaa caaaccaatg ccktggttct cagctacaga 3120
gaaagctgac tgatcacgtg taggaaagaa caggagcgct gggggcagag agactgttta 3180
tttggttgca tcttaatccc cggatgattg acaggattag tgaaatgtat ctctaccctg 3240
cactctctgt ctgctaatta caaccagttg ctgaatactt caccttcttg cccagggatt 3300
ttaacctgca aattcactaa ctggccatgc aaagcaatga gcaactttgc tgactagtgc 3360
cttgacataa ggcaagttat cagctaaaat aaaagatttt atttaccttc gaataccttt 3420
gtcaaattct tatacagtat aattagattt gtttgaaaga tagatagatc atctactcta 3480
aatgattact aaggtgctca ctaatcaacc cgcattactg ggggttaatt cttcttgcag 3540
aaatgattgg ttccagcatg aaaaaattct tatctgaatc tttttttctc taagcgtgtg 3600
atttgcatct gggagtcaat attgggctgg ataattgtgc agagttttga gggtctgggc 3660
cagagttgga gagctttgag agtttataag cctataacga gctttatgtt ggatttgtca 3720
caggtacgga tagacattaa atgcattcac atattctaaa tcagggcttt tccgcctgtc 3780
ctctcaaatg ttttatgatt taccattaaa ctgccattct caggcataaa gagaaactga 3840
ggtgtgttca ctagtactaa ttctgaggaa tacatgccca gtagtgctgt ttgaatgaca 3900
agctgattta ttataggagt aggaagtaca aaaaaaatcc acaattaaaa atatttctac 3960
tcacaattgg aatttttttc gcagttttcc agtataagtt tacgctcctc aatcaggcaa 4020
ccttccagag gggcaaagat ctttatacat tgctcacaaa tgagttgaac tggcagctca 4080
cgaatgggac atggagctgt catttactat gctccccaat gcaagtgcta gagcactaag 4140
gggtgcaaaa agagagctcc ttcgtgctaa ttctaaaagc attgatcctg gggtccagct 4200
gtgctgtgga agggaaaggg tcaataaagg ggacatctgc aatcttcccc ttccccacat 4260
gaatacagtg ctgcttgatg caggaactga tgaatcccgg tctctctgct ccatttttga 4320
gtacagagac ttgtgaaatc tagagaactg caagacatga ttcaaagtgc taagtgcaaa 4380
aaacaatggt ggtttatatc tgtctttgta ctttacactt gttcacttac agtccctaca 4440
attgtgtcta gtgcagtggt ccccaaccag tagctcgtta gtaacatgtt gctcccccaa 4500
ccccttggat gttgctccca atggcctcaa aacaattgct tatttttcaa ttccaggcaa 4560
gttttggttg cataaaaacc aggtctatgg ccaaacagag ccccctctgg gctgcaaatc 4620
cacaaagggc taccaaatag acaatcatat tctttattag gcaccccaag ggcttttttc 4680
acgcttgtgc tgctccgcaa ctctttttac atttgaatgt ggcttatggg ttaaaaaggt 4740
gcaacacaaa caaataatct attatttaca cactagtcaa gactggtgct cagctgtggt 4800
ttgaagattc taattcaatg aactaatggt aaccagggcc ggatttgtat ttctgcagcc 4860
cctaggccat gcggtcctaa cgtctgtcca cgacgagtct tattgccatc cacccgcaac 4920
tcccgcaagt gcaaattttg gagcactggt gctcttcagc aagtggctgg gcggcatgcc 4980
gtccctaaaa gttcgccgcc ctaggcacag gcctttgtgg cctctccaca aatccaagcc 5040
tgatggtaac taaatgtaga gggaactgag taaaccccaa aaatggctgc cctggctcct 5100
acaatatgga attatctcct gtaggtcaga cctggatttc ttcctgtcac ttttaaatac 5160
actttcttct tgtgtgttta acagagagag agattgacag gtgtagactt aatacgttta 5220
agggaagcca attaacactt tgcaatttta gcttggatta cagtgattaa tagtgcgcta 5280
aatcctttgt tgctgacgct gggggttgca agcttactcc aggtgggact ttaaaaggac 5340
gaggggacag tgggtcatac tgtagaacag cttcagttgg gatcacaggc ttctagggat 5400
cctttgggca aaaaagaaac acagaaggca ttctttctat acaagaaagg actttataga 5460
gctgctacca tgaacggaac agaaggtcca aatttttatg tccccatgtc caacaaaact 5520
ggggtggtac gaagcccatt cgattaccct cagtattact tagcagagcc atggcaatat 5580
tcagcactgg ctgcttacat gttcctgctc atcctgcttg ggttaccaat caacttcatg 5640
accttgtttg ttaccatcca gcacaagaaa ctcagaacac ccctaaacta catcctgctg 5700
aacctggtat ttgccaatca cttcatggtc ctgtgtgggt tcacggtgac aatgtacacc 5760
tcaatgcacg gctacttcat ctttggccaa actggttgct acattgaagg cttctttgct 5820
acacttggtg gtaagttcca atgggctttc gtcactgata ttgttgtagc aataaattct 5880
tggaaagctc gtaagggaac aagctaccag ggaaagggtt atagggctga aaaggaatat 5940
cagtactttc tatgttctcc agcagagtgt agtgcatacc atgttagaga aagttcaaca 6000
tgtaatactg tgaggggcca aattgcctgg gttgagtcat gttaaccttt tgccttttcc 6060
tgttcttttt actaacaggt gaagtggccc tctggtcact ggtagtattg gccgttgaaa 6120
gatatatggt ggtctgcaag cccatggcca acttccgatt cggggagaac catgctatta 6180
tgggtgtagc cttcacatgg atcatggctt tgtcttgtgc tgctcctcct ctcttcggat 6240
ggtccaggta aatatatata acatcagtca gcatatccct agaaaagtat atctaatgat 6300
acaactacgg tatatataaa cttgtagaaa catccaccaa agttacagca tgagttaagg 6360
aagagtacat agaaggtcag ctaatgcttt ggaaaaatac aatagaaggt cagctaatgc 6420
agaggttacc aaactccttt gggggctcca agctttggat ggaagcccag tttgaggtca 6480
aggtttgaga tttgttaatt actcctggaa ctagaaaaga gttagttgcc cacatcttat 6540
aacagcgaga caatactgac aattggtagt tgttgctgaa attcagcttt ctacacccca 6600
ctacagccat tggctgcaat attgagttca gcttggagag aactcaatcc aggattgcac 6660
ttctacattt tattccagta ttctatttat cagatgagct tgtgcttaaa ccccaaggac 6720
tcaatgctga tgaataatgt taggatttac agttcaataa caattgagag atacaggatg 6780
tctattcctg taatgtgggt aacagagtat gtgcttgttg gctctgacac tatattgtcc 6840
ttgtgcagat acatcccaga gggaatgcaa tgctcatgcg gagtagacta ctacacactg 6900
aagcctgagg tcaacaatga atcctttgtt atctacatgt tcattgtcca cttcaccatt 6960
cccctgattg tcatcttctt ctgctatggt cgcctgctct gcactgtcaa agaggtgagt 7020
agtcattatc atttggtcat ggtcacaacc caatccaact agttctaaac atagaccctc 7080
caggtgttat tgaactgtta ctacttcttg gacttctcta caaccttgtt tgactgactg 7140
gagagagaaa gatcagtaaa atctgattat gaagagaaca aagtcctaca ccttgtatgc 7200
ccaatatcta ctactagact gttgctcttc tgtcctaact tctcttatct tacccatttc 7260
ataggctgca gcccagcaac aggaatctgc taccacccag aaggctgaga aagaggtcac 7320
cagaatggtt gttatcatgg tcgttttctt cctgatctgt tgggtgccct atgcctatgt 7380
ggcattctac atcttcaccc accagggctc taactttggc ccagtcttca tgaccgtccc 7440
agctttcttt gccaagagct ctgctatcta caatcctgtc atctacattg tcttgaacaa 7500
acaggtacta aactacttcc aagtctgttc ttatttttta atcagcagtt tgtcaacttt 7560
atgtatattt cctctcctat atgggtttcc aagggtttct atgtaatata taggatacca 7620
agaattctga ccaccagctc ttgttgagac tcccaccagt ctacagctgt catctaggaa 7680
tggtggaagt ttcagttcaa ccaaagcaaa gagtgctaaa catgagctga ttaactatga 7740
ctcccattgt ctatagctgc agttaaaaaa agtcatggag aatgttctgc tacttatgat 7800
gactgtgttg ccttaggatc agcatacaac ttggggtagt aagggcattt gtcttaggtc 7860
ccaaaatgga aggggctttt agaggagaaa cacagataaa actacaaaga ccaccagtgt 7920
tttagtattt taaaacacgg gtaataaccc ttgagcaaac ttcgtgtgct ggattaatta 7980
ttacgtacct ttcgttgggg gtgccgtcct cctatgatcc atgcaccgtg aacgttgaaa 8040
gagggaccag gtgtgcatct gcatttcgtt tggcttagta ttttacaacc ttcgtataca 8100
tcaatatgca atgcattact tatttttagg gtagtagaga ctaaatgagt acaacaatac 8160
agaagagatg aatggactag ataatgactg ttctcctttc tctccccagt tccgtaactg 8220
cttgatcacc accctgtgct gtggaaagaa tccattcggt gatgaagatg gctcctctgc 8280
agccacctcc aagacagaag cttcttctgt ctcttccagc caggtgtctc ctgcataaga 8340
gcttcaccag ggctgtctca gggtccgctg cctcacacaa ttcccatcac ttaagccctg 8400
tctacttgtt gcgaaggcaa agaattccac agttttaata tttaccccca ttctgcccaa 8460
ccttggacac tgtaagagct gaccccatta ctgctgggaa ggcccaagct ttgttgcatt 8520
ctgatgtgat cctttcagca gaaaatgggt ggattcaatg aatttcacca aggctgtaca 8580
taacaataac attagtctga aggcacctcc cacccagaga atgcaacact tatttatctc 8640
tgtcttttct tgacatattg atgctgcttc tattcatggt cactaacaaa aagtcccatt 8700
ttacaatgca actgaaagta atgtattttt gtaatataat aacatatttc atgcaatctc 8760
ctctgcttat tggcaaggtc tgatatagtg aggatagaca gccagacccc ttgcattaaa 8820
atcctgtatt aaaaatttct ttgcaagtaa aaaaaaaaac acaaaaagtc aaatgtctta 8880
ttcgatttat ttcacacttt gattgtctgg ttat 8914
//
ID AF123456; SV 2; linear; mRNA; STD; VRT; 1510 BP.
XX
AC AF123456;
XX
DT 24-MAR-1999 (Rel. 59, Created)
DT 15-APR-2005 (Rel. 83, Last updated, Version 5)
XX
DE Gallus gallus doublesex and mab-3 related transcription factor 1 (DMRT1)
DE mRNA, partial cds.
XX
KW .
XX
OS Gallus gallus (chicken)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves;
OC Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus.
XX
RN [1]
RP 1-1510
RX DOI; 10.1038/6769.
RX PUBMED; 10080173.
RA Nanda I., Shan Z.H., Schartl M., Burt D.V., Koehler M., Nothwang H.-G.,
RA Gruetzner F., Paton I.R., Windsor D., Dunn I., Engel W., Staeheli P.,
RA Mizuno S., Haaf T., Schmid M.;
RT "300 million years of conserved synteny between chicken Z and human
RT chromosome 9";
RL Nat. Genet. 21(3):258-259(1999).
XX
RN [2]
RP 1-1510
RX PUBMED; 10894941.
RA Nanda I., Zend-Ajusch E., Shan Z., Gruetzner F., Schartl M., Burt D.W.,
RA Koehler M., Fowler V.M., Goodwin G., Schneider W.J., Mizuno S., Dechant G.,
RA Haaf T., Schmid M.;
RT "Conserved synteny between the chicken Z sex chromosome and human
RT chromosome 9 includes the male regulatory gene DMRT1: a comparative
RT (re)view on avian sex determination";
RL Cytogenet. Cell Genet. 89(1-2):67-78(2000).
XX
RN [3]
RP 1-1510
RA Haaf T., Shan Z.H.;
RT ;
RL Submitted (25-JAN-1999) to the EMBL/GenBank/DDBJ databases.
RL Max-Planck Institute for Molecular Genetics, Ihnestr. 73, Berlin 14195,
RL Germany
XX
RN [4]
RC Sequence update by submitter
RP 1-1510
RA Shan Z.;
RT ;
RL Submitted (23-DEC-1999) to the EMBL/GenBank/DDBJ databases.
RL MPI of Molecular Genetics, Ihnestr. 73, Berlin 14195, Germany
XX
CC On Dec 23, 1999 this sequence version replaced gi:4454562.
XX
FH Key Location/Qualifiers
FH
FT source 1..1510
FT /organism="Gallus gallus"
FT /chromosome="Z"
FT /map="Zp21"
FT /mol_type="mRNA"
FT /db_xref="taxon:9031"
FT CDS <1..936
FT /codon_start=1
FT /gene="DMRT1"
FT /product="doublesex and mab-3 related transcription factor
FT 1"
FT /note="cDMRT1"
FT /db_xref="GOA:Q9PTQ7"
FT /db_xref="InterPro:IPR001275"
FT /db_xref="InterPro:IPR022114"
FT /db_xref="UniProtKB/Swiss-Prot:Q9PTQ7"
FT /protein_id="AAF19666.1"
FT /translation="PAAGKKLPRLPKCARCRNHGYSSPLKGHKRFCMWRDCQCKKCSLI
FT AERQRVMAVQVALRRQQAQEEELGISHPVPLPSAPEPVVKKSSSSSSCLLQDSSSPAHS
FT TSTVAAAAASAPPEGRMLIQDIPSIPSRGHLESTSDLVVDSTYYSSFYQPSLYPYYNNL
FT YNYSQYQMAVATESSSSETGGTFVGSAMKNSLRSLPATYMSSQSGKQWQMKGMENRHAM
FT SSQYRMCSYYPPTSYLGQGVGSPTCVTQILASEDTPSYSESKARVFSPPSSQDSGLGCL
FT SSSESTKGDLECEPHQEPGAFAVSPVLEGE"
XX
SQ Sequence 1510 BP; 320 A; 433 C; 472 G; 285 T; 0 other;
ccggcggcgg gcaagaagct gccgcgtctg cccaagtgtg cccgctgccg caaccacggc 60
tactcctcgc cgctgaaggg gcacaagcgg ttctgcatgt ggcgggactg ccagtgcaag 120
aagtgcagcc tgatcgccga gcggcagcgg gtgatggccg tgcaggttgc actgaggagg 180
cagcaagccc aggaagagga gctggggatc agccaccctg tacccctgcc cagtgcccct 240
gagccagttg tcaagaagag cagcagcagc agctcctgtc tcctgcagga cagcagcagc 300
cctgctcact ccacgagcac ggtggcagca gcagcagcga gcgcaccacc agagggacgg 360
atgctcattc aggacatccc ttccatcccc agcagagggc acttggagag cacgtctgat 420
ttggttgtgg actccaccta ctacagcagt ttttaccagc catccctgta tccttactat 480
aacaacctgt acaactactc ccagtaccaa atggcagtgg ccactgagtc ttcctcaagt 540
gagacagggg gtacgtttgt agggtcagcc atgaaaaaca gccttcgaag cctcccagca 600
acatacatgt caagccagtc aggaaaacag tggcagatga agggaatgga gaaccgccat 660
gccatgagct cccagtaccg gatgtgctcc tactacccgc ccacctcata cctgggccag 720
ggggttggca gtcccacctg cgtcacacag atactggcct cggaggacac cccctcctac 780
tcagagtcga aagcgagagt gttttcgccg cccagcagcc aggactcggg cctggggtgc 840
ctgtcgagca gcgagagcac caagggagac ctggagtgcg agccccacca agagcccggc 900
gccttcgcgg tgagcccggt tcttgagggc gagtaggcgc ggcgtcgggc ggctgctgcg 960
cggcgttcac tgttgccttg ttctgttggg gttgcggggg ggcgttgggt ttcttctttc 1020
cggggcgggg ggggcacggc ggggccgcgg ccgggccggc ggggcggggc ggggcgggac 1080
ggggcggggc ggagccgcgc gggggccgca gtccgggccg gggccgccgt cgggtctcgg 1140
cccgctcccg tcggggcgga gcgtccgacg atcggcctcc acgaaacgcg gtgccgtgat 1200
gtgtttgtag tggttcctcg taggctccag acgttttctc ctcgtatcgc caaattaacg 1260
cgttttgcat attacagttg agtgcctcga cttagattgc aatataagcg gccagcaaac 1320
aagtctcaaa aaaaagttac gtgcgtttct gcgagtgtta ttttgttaag aacggctcac 1380
agtgtcctct tcctgtgtta cagaagccaa cctgaaatga aactagtctg gaaaaattca 1440
ttgttctctg tagttgcagc tgtacctgaa ataaaaatgt tattgatgac tgaaaaaaaa 1500
aaaaaaaaaa 1510
//
ID AF123457; SV 1; linear; mRNA; STD; INV; 1634 BP.
XX
AC AF123457;
XX
DT 31-JAN-2001 (Rel. 66, Created)
DT 15-APR-2005 (Rel. 83, Last updated, Version 3)
XX
DE Toxoplasma gondii enolase (ENO2) mRNA, complete cds.
XX
KW .
XX
OS Toxoplasma gondii
OC Eukaryota; Alveolata; Apicomplexa; Coccidia; Eucoccidiorida; Eimeriorina;
OC Sarcocystidae; Toxoplasma.
XX
RN [1]
RP 1-1634
RX DOI; 10.1006/jmbi.2001.4730.
RX PUBMED; 11399076.
RA Dzierszinski F., Mortuaire M., Dendouga N., Popescu O., Tomavo S.;
RT "Differential expression of two plant-like enolases with distinct enzymatic
RT and antigenic properties during stage conversion of the protozoan parasite
RT Toxoplasma gondii";
RL J. Mol. Biol. 309(5):1017-1027(2001).
XX
RN [2]
RP 1-1634
RA Dzierszinski F., Tomavo S.;
RT "Tachyzoite 76K strain enolase of Toxoplasma gondii";
RL Unpublished.
XX
RN [3]
RP 1-1634
RA Dzierszinski F., Tomavo S.;
RT ;
RL Submitted (25-JAN-1999) to the EMBL/GenBank/DDBJ databases.
RL INSERM, 369, Rue Jules Guesde BP 39, Villeneuve D'Ascq 59651, France
XX
FH Key Location/Qualifiers
FH
FT source 1..1634
FT /organism="Toxoplasma gondii"
FT /strain="76K"
FT /mol_type="mRNA"
FT /dev_stage="tachyzoite"
FT /db_xref="taxon:5811"
FT CDS 27..1361
FT /codon_start=1
FT /gene="ENO2"
FT /product="enolase"
FT /db_xref="GOA:Q9BPL7"
FT /db_xref="InterPro:IPR000941"
FT /db_xref="InterPro:IPR020809"
FT /db_xref="InterPro:IPR020810"
FT /db_xref="InterPro:IPR020811"
FT /db_xref="UniProtKB/Swiss-Prot:Q9BPL7"
FT /protein_id="AAG60329.1"
FT /translation="MVAIKDITARQILDSRGNPTVEVDLLTDGGCFRAAVPSGASTGIY
FT EALELRDKDQTKFMGKGVMKAVENIHKIIKPALIGKDPCDQKGIDKLMVEELDGTKNEW
FT GWCKSKLGANAILAVSMACCRAGAAAKGMPLYKYIATLAGNPTDKMVMPVPFFNVINGG
FT SHAGNKVAMQEFMIAPVGASTIQEAIQIGAEVYQHLKVVIKKKYGLDATNVGDEGGFAP
FT NISGATEALDLLMEAIKVSGHEGKVKIAADVAASEFFLQDDKVYDLDFKTPNNDKSQRK
FT TGEELRNLYKDLCQKYPFVSIEDPFDQDDFHSYAQLTNEVGEKVQIVGDDLLVTNPTRI
FT EKAVQEKACNGLLLKVNQIGTVSESIEACQLAQKNKWGVMVSHRSGETEDSFIADLVVG
FT LRTGQIKTGAPCRSERLCKYNQLMRIEESLGSDCQYAGAGFRHPN"
XX
SQ Sequence 1634 BP; 396 A; 463 C; 457 G; 318 T; 0 other;
tctaccgtta ctcaacttcc aacaaaatgg tggccatcaa ggacatcact gctcgtcaga 60
tcctcgactc ccgaggaaac ccgaccgtcg aggttgactt gttgaccgat ggcggctgct 120
tccgtgccgc tgtccccagc ggcgcatcca ctggcatcta cgaggcgctt gagctccgtg 180
acaaggacca aactaagttc atgggcaagg gtgtgatgaa ggccgtggag aacatccaca 240
agattatcaa gccggcgctt attggcaagg acccgtgcga ccagaagggt attgacaagc 300
tgatggtcga ggagctcgat ggaactaaga acgagtgggg ctggtgcaag tcgaagctcg 360
gcgcgaacgc gatcctggcc gtctcgatgg cttgctgccg cgccggcgct gctgccaagg 420
gcatgcccct gtacaagtac attgccactt tggctggaaa cccgacagac aagatggtaa 480
tgcccgtccc gttcttcaac gtcatcaacg gcggctccca cgcaggcaac aaggtcgcga 540
tgcaggagtt catgatcgcc cccgtcggcg cctccacaat ccaagaggcg atccagatcg 600
gcgcggaagt gtaccagcac ctgaaggtcg tcattaagaa gaagtatggc ctcgacgcca 660
cgaacgtcgg cgacgagggt ggcttcgccc ccaacatcag cggcgccacg gaggccctcg 720
acttgctgat ggaggccatc aaggtgtctg gtcacgaagg caaggtcaag attgccgccg 780
acgtcgccgc ttccgagttc ttcctccagg acgacaaagt ctatgaccta gacttcaaga 840
ctccgaacaa cgacaagtcg caacgcaaga ctggcgaaga gcttcgcaac ctgtacaagg 900
acctgtgcca gaagtatccc ttcgtgtcca tcgaggaccc gttcgaccag gacgacttcc 960
acagctacgc tcagctcacc aacgaggttg gcgagaaggt ccaaatcgtc ggcgacgacc 1020
tcctggtcac caacccgacg cgcattgaga aggccgttca ggagaaagcg tgcaacggcc 1080
tgcttctcaa ggtgaaccag attggcacag tcagcgagtc tatcgaggcc tgccagcttg 1140
cccagaagaa caagtggggc gttatggttt ctcaccgctc cggtgagact gaggactcct 1200
tcatcgctga cctcgtcgtc ggtctccgca ccgggcaaat caagactggc gccccgtgca 1260
gatccgagcg tctctgcaag tacaaccagc tgatgcgtat cgaagagtcg ctcggctccg 1320
actgtcagta cgccggcgct ggcttccgcc atcccaacta agtggaaacg gagtttcgac 1380
tacccaactg ctcaattggg gctgggtggt ttgtccactc tgcaacaagg gcgtgacgag 1440
atcgttgcac atgcaactgc cttttttgtg cttggtggga aggagcactt tcgcaggtgc 1500
agcaccgagt tgcggttgat gggaatttcg gaactgattt gtttcttgca tgccatcacc 1560
gaaggaacga gcagtttcgt tgataatatt ggaaagtctt ttgaaaaaaa aaaaaaaaaa 1620
aaaaaaaaaa aaaa 1634
//
|