/usr/share/EMBOSS/test/data/testids.ncbi is in emboss-test 6.4.0-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 | >gb|G12345|GENBANK genbank identifier with accession
GENBANK
>emb|E12345|EMBL embl identifier with accession
EMBL
>dbj|D12345|DDBJ DDBJ identifier with accession
DDB-
>pir||PIR PIR entry with empty accession
PIR
>prf||PRF Protein Research Foundation with empty accession
PRF
>sp|P01234|SWISS_PRT swissprot identifier with accession
SWISSPR-T
>pdb|2PDB|A PDB entry with chain
-PDB-A
>pat|uk|12345 Patent entry with country
PAT-K
>bbs|geninfo Geninfo Backbone Id
GENINF-
>gnl|PID|e1234 General identifier with db (this is a PID protein id)
GNLPID
>ref|NP_007225.1|REF_12345 NCBI Reference Sequence
REFSEQ
>ref|NM_012488.1| NCBI Reference Sequence with no locus
REFSEQ
>lcl|localid Local identifier (no database name)
L-CALID
>gi|123456 gi prefix
GIPREFIX
>gi|123456|gb|G67890|GIGENBANK gi and genbank together
GIGENBANK
>gi|234567|sp|P01234|GISWISS_PRT gi and swissprot together
GISWISSPR-T
>gnl|BL_ORD_ID|0 Blast formatdb prefix for simple names
BLAST
>gi|1234567|tpg|DAA00001.1| TPA: with no locus
TPG
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