/usr/share/EMBOSS/test/data/site.dat is in emboss-test 6.4.0-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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XX
ID HS$ALBU_01
XX
DT 20.06.90 (created); ewi.
DT 24.08.95 (updated); hiwi.
XX
TY D
XX
DE albumin; Gene: G000188.
XX
SQ tGGTTAGtaattactaa.
XX
SF -363
ST -338
XX
BF T00368; HNF-1A;Quality: 1; Species: human, Homo sapiens.
BF T00369; HNF-1;Quality: 1; Species: rat, Rattus norvegicus.
BF T01950; HNF-1B;Quality: 1; Species: human, Homo sapiens.
BF T01951; HNF-1C;Quality: 1; Species: human, Homo sapiens.
XX
OS human, Homo sapiens
OC eukaryota; animalia; metazoa; chordata; vertebrata;
OC tetrapoda; mammalia; eutheria; primates
XX
SO 0103; Hep3B
SO 0289; rl
XX
MM gel retardation
MM direct gel shift
MM DNase I footprinting
MM gel shift competition
MM affinity chromatography
MM methylation interference
XX
DR EMBL: M13075; HSALBEX1(695:711).
XX
RN [1]
RA Frain M., Swart G., Monaci P., Nicosia A., Staempfli
RA S., Frank R., Cortese R.
RT The liver-specific transcription factor LF-B1 contains
RT a highly diverged homeobox DNA binding domain
RL Cell 59:145-157 (1989).
RN [2]
RA Frain M., Hardon E., Ciliberto G., Sala-Trepat J. M.
RT Binding of a liver-specific factor to the human albumin
RT gene promoter and enhancer
RL Mol. Cell. Biol. 10:991-999 (1990).
XX
//
AC R00078
XX
ID HS$ALBU_02
XX
DT 20.06.90 (created); ewi.
DT 24.08.95 (updated); hiwi.
XX
TY D
XX
DE albumin; Gene: G000188.
XX
SQ TTGGCA.
XX
SF -136
ST -107
XX
BF T00599; NF-1/L;Quality: 6; Species: rat, Rattus norvegicus.
XX
OS human, Homo sapiens
OC eukaryota; animalia; metazoa; chordata; vertebrata;
OC tetrapoda; mammalia; eutheria; primates
XX
SO 0289; rl
XX
MM gel retardation
MM DNase I footprinting
XX
DR EMBL: M13075; HSALBEX1(927:932).
XX
RN [1]
RA Paonessa G., Gounari F., Frank R., Cortese R.
RT Purification of a NF1-like DNA-binding protein from
RT rat liver and cloning of the corresponding cDNA
RL EMBO J. 7:3115-3123 (1988).
XX
//
AC R00079
XX
ID HS$ALBU_03
XX
DT 20.06.90 (created); ewi.
DT 24.08.95 (updated); hiwi.
XX
TY D
XX
DE albumin; Gene: G000188.
XX
SQ TGGCA.
XX
SF -102
ST -79
XX
BF T00599; NF-1/L;Quality: 6; Species: rat, Rattus norvegicus.
XX
OS human, Homo sapiens
OC eukaryota; animalia; metazoa; chordata; vertebrata;
OC tetrapoda; mammalia; eutheria; primates
XX
SO 0289; rl
XX
MM gel retardation
MM DNase I footprinting
XX
DR EMBL: M13075; HSALBEX1(959:963).
DR EPD: E16042; EP016042.
XX
RN [1]
RA Paonessa G., Gounari F., Frank R., Cortese R.
RT Purification of a NF1-like DNA-binding protein from
RT rat liver and cloning of the corresponding cDNA
RL EMBO J. 7:3115-3123 (1988).
XX
//
AC R00080
XX
ID HS$ALBU_04
XX
DT 20.06.90 (created); ewi.
DT 24.08.95 (updated); hiwi.
XX
TY D
XX
DE albumin; Gene: G000188.
XX
SQ TTAATAAT.
XX
SF -91
ST 17
XX
BF T00015; AFP1;Quality: 6; Species: human, Homo sapiens.
XX
OS human, Homo sapiens
OC eukaryota; animalia; metazoa; chordata; vertebrata;
OC tetrapoda; mammalia; eutheria; primates
XX
SO 0115; HuH-7
XX
MM direct gel shift
XX
DR EMBL: M13075; HSALBEX1(991:998).
XX
RN [1]
RA Sawadaishi K., Morinaga T., Tamaoki T.
RT Interaction of a Hepatoma-Specific Nuclear Factor
RT with Transcription-Regulatory Sequences of the Human
RT alpha-Fetoprotein and Albumin Genes
RL Mol. Cell. Biol. 8:5179-5187 (1988).
XX
//
AC R00081
XX
ID HS$ALBU_05
XX
DT 20.06.90 (created); ewi.
DT 24.08.95 (updated); hiwi.
XX
TY D
XX
DE albumin; Gene: G000188.
XX
SQ TCTAGTTAATAATCTACAAT.
XX
SF -72
ST -42
XX
BF T00369; HNF-1;Quality: 4; Species: rat, Rattus norvegicus.
XX
OS human, Homo sapiens
OC eukaryota; animalia; metazoa; chordata; vertebrata;
OC tetrapoda; mammalia; eutheria; primates
XX
SO 0289; rl
XX
MM gel retardation
MM DNase I footprinting
MM gel shift competition
MM methylation interference
XX
DR EMBL: M13075; HSALBEX1(986:1005).
DR EPD: E16042; EP016042.
XX
RN [1]
RA Hardon E. M., Frain M., Paonessa G., Cortese R.
RT Two distinct factors interact with the promoter regions
RT of several liver-specific genes
RL EMBO J. 7:1711-1719 (1988).
RN [2]
RA Toniatti C., Demartis A., Monaci P., Nocosia A., Ciliberto G.
RT Synergistic trans-activation of the human C-reactive
RT protein promoter by transcription factor HNF-1 binding at two distinct sites
RL EMBO J. 9:4467-4475 (1990).
XX
//
AC R04140
XX
ID Y$ADH1_02
XX
DT 12.04.95 (created); ewi.
DT 03.01.96 (updated); hiwi.
XX
TY D
XX
DE ADH1 (alcohol dehydrogenase); Gene: G000870.
XX
SQ ACAATATGGACTTCCTCTTTTCTGG.
XX
SF -694
ST 0
XX
BF T00322; GCR1;Quality: 2; Species: yeast, Saccharomyces cerevisiae.
XX
OS yeast, Saccharomyces cerevisiae
OC eukaryota; plantae; thallobionta; eumycota; hemiascomycetes;
OC endomycetales; saccharomycetaceae
XX
SO 0324; rec(yeast-ret lys)
XX
MM direct gel shift
XX
DR EMBL: V01292; SCADHI(57:81).
XX
RN [1]
RA Huie M. A., Scott E. W., Drazinic C. M., Lopez M.
RA C., Hornstra I. K., Yang T. P., Baker H. V.
RT Characterization of the DNA-binding activity of GCR1:
RT In vivo evidence for two GCR1-binding sites in the
RT upstream activating sequence of TPI of Saccharomyces cerevisiae
RL Mol. Cell. Biol. 12:2690-2700 (1992).
XX
//
AC R04412
XX
ID MOUSE$FCGR3A_01
XX
DT 14.05.97 (created); ewi.
DT 14.05.97 (updated); ewi.
XX
TY D
XX
DE FcgammaRIIIA (low-affinity Fc receptor IIIA for IgG); Gene: G001014.
XX
SQ GTCTGCTGACC.
XX
EL MRR
XX
SF -88
ST -78
XX
BF T00811; TFE3;Quality: 2; Species: human, Homo sapiens.
BF T00874; USF;Quality: 2; Species: human, Homo sapiens.
XX
OS mouse, Mus musculus
OC eukaryota; animalia; metazoa; chordata; vertebrata;
OC tetrapoda; mammalia; eutheria; rodentia; myomorpha; muridae; murinae
XX
SO 0306; rec(human-E.coli)
SO 0495; A20
SO 0848; RAW264.7
XX
MM direct gel shift
MM methylation interference
XX
DR EMBL: U11854; MM11854(1931:1941).
XX
RN [1]
RA Feinman R., Qiu W. Q., Pearse R. N., Nikolajczyk B.
RA S., Sen R., Sheffery M., Ravetch J. V.
RT PU.1 and an HLH family member contribute to the myeloid-specific
RT transcription of the FcgammaRIIIA promoter
RL EMBO J. 13:3852-3860 (1994).
XX
//
AC R04413
XX
ID MOUSE$FCGR3A_02
XX
DT 14.05.97 (created); ewi.
DT 14.05.97 (updated); ewi.
XX
TY D
XX
DE FcgammaRIIIA (low-affinity Fc receptor IIIA for IgG); Gene: G001014.
XX
SQ TTCCTC.
XX
EL MRR
XX
SF -48
ST -43
XX
BF T00702; PU.1;Quality: 3; Species: mouse, Mus musculus.
XX
OS mouse, Mus musculus
OC eukaryota; animalia; metazoa; chordata; vertebrata;
OC tetrapoda; mammalia; eutheria; rodentia; myomorpha; muridae; murinae
XX
SO 0495; A20
SO 0848; RAW264.7
XX
MM direct gel shift
MM methylation interference
MM supershift (antibody binding)
XX
DR EMBL: U11854; MM11854(1971:1976).
XX
RN [1]
RA Feinman R., Qiu W. Q., Pearse R. N., Nikolajczyk B.
RA S., Sen R., Sheffery M., Ravetch J. V.
RT PU.1 and an HLH family member contribute to the myeloid-specific
RT transcription of the FcgammaRIIIA promoter
RL EMBO J. 13:3852-3860 (1994).
XX
//
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