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/usr/share/EMBOSS/test/data/prev.comp is in emboss-test 6.4.0-2.

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The actual contents of the file can be viewed below.

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#
# Output from 'compseq'
#
# The Expected frequencies are calculated on the (false) assumption that every
# word has equal frequency.
#
# The input sequences are:
#	HSFAU


Word size	3
Total count	516

#
# Word	Obs Count	Obs Frequency	Exp Frequency	Obs/Exp Frequency
#
AAA	17		0.0329457	0.0156250	2.1085271
AAC	5		0.0096899	0.0156250	0.6201550
AAG	18		0.0348837	0.0156250	2.2325581
AAT	4		0.0077519	0.0156250	0.4961240
ACA	5		0.0096899	0.0156250	0.6201550
ACC	6		0.0116279	0.0156250	0.7441860
ACG	2		0.0038760	0.0156250	0.2480620
ACT	7		0.0135659	0.0156250	0.8682171
AGA	12		0.0232558	0.0156250	1.4883721
AGC	7		0.0135659	0.0156250	0.8682171
AGG	16		0.0310078	0.0156250	1.9844961
AGT	10		0.0193798	0.0156250	1.2403101
ATA	2		0.0038760	0.0156250	0.2480620
ATC	3		0.0058140	0.0156250	0.3720930
ATG	7		0.0135659	0.0156250	0.8682171
ATT	2		0.0038760	0.0156250	0.2480620
CAA	10		0.0193798	0.0156250	1.2403101
CAC	6		0.0116279	0.0156250	0.7441860
CAG	13		0.0251938	0.0156250	1.6124031
CAT	5		0.0096899	0.0156250	0.6201550
CCA	12		0.0232558	0.0156250	1.4883721
CCC	13		0.0251938	0.0156250	1.6124031
CCG	8		0.0155039	0.0156250	0.9922481
CCT	10		0.0193798	0.0156250	1.2403101
CGA	2		0.0038760	0.0156250	0.2480620
CGC	10		0.0193798	0.0156250	1.2403101
CGG	9		0.0174419	0.0156250	1.1162791
CGT	4		0.0077519	0.0156250	0.4961240
CTA	5		0.0096899	0.0156250	0.6201550
CTC	11		0.0213178	0.0156250	1.3643411
CTG	10		0.0193798	0.0156250	1.2403101
CTT	11		0.0213178	0.0156250	1.3643411
GAA	11		0.0213178	0.0156250	1.3643411
GAC	6		0.0116279	0.0156250	0.7441860
GAG	10		0.0193798	0.0156250	1.2403101
GAT	4		0.0077519	0.0156250	0.4961240
GCA	7		0.0135659	0.0156250	0.8682171
GCC	18		0.0348837	0.0156250	2.2325581
GCG	8		0.0155039	0.0156250	0.9922481
GCT	10		0.0193798	0.0156250	1.2403101
GGA	13		0.0251938	0.0156250	1.6124031
GGC	17		0.0329457	0.0156250	2.1085271
GGG	7		0.0135659	0.0156250	0.8682171
GGT	9		0.0174419	0.0156250	1.1162791
GTA	6		0.0116279	0.0156250	0.7441860
GTC	9		0.0174419	0.0156250	1.1162791
GTG	8		0.0155039	0.0156250	0.9922481
GTT	5		0.0096899	0.0156250	0.6201550
TAA	7		0.0135659	0.0156250	0.8682171
TAC	3		0.0058140	0.0156250	0.3720930
TAG	4		0.0077519	0.0156250	0.4961240
TAT	1		0.0019380	0.0156250	0.1240310
TCA	10		0.0193798	0.0156250	1.2403101
TCC	6		0.0116279	0.0156250	0.7441860
TCG	7		0.0135659	0.0156250	0.8682171
TCT	10		0.0193798	0.0156250	1.2403101
TGA	4		0.0077519	0.0156250	0.4961240
TGC	9		0.0174419	0.0156250	1.1162791
TGG	14		0.0271318	0.0156250	1.7364341
TGT	5		0.0096899	0.0156250	0.6201550
TTA	2		0.0038760	0.0156250	0.2480620
TTC	10		0.0193798	0.0156250	1.2403101
TTG	7		0.0135659	0.0156250	0.8682171
TTT	7		0.0135659	0.0156250	0.8682171

Other	0		0.0000000	0.0000000	10000000000.0000000