/usr/share/EMBOSS/test/data/op2.ali is in emboss-test 6.4.0-2.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 | >OPSD_CAMHU O18312 Rhodopsin (Fragment)
-----------------------------------LHMIHLHWYQYPPMNPMMYPLLLIF
MLFTGILCLAGNFVTIWVFMNTKSLRTPANLLVVNLAMSDFLMMFTMFPPMMVTCYYHTW
TLGPTFCQVYAFLGNLCGCASIWTMVFITFDRYNVIVKGVAGEPLSTKKASLWILSVWVL
STAWCIAPFFGWNHYVPEGNLTGCGTDYLSEDI--LSRSYLYIYSTW-VYFLPLAITIYC
YVFIIKAVAAHEKGMRDQAKKMGIKSLRNEEAQKTSAECRLAKNAMTTVALWFIAWTPCL
LINWVGM-FARSYLSPVYTIWGYVFAKANAVYNPIVYAIS--------------------
-----------------------------
>OPSD_CAMLU O16017 Rhodopsin (Fragment)
-----------------------------------LHMIHLHWYQYPPMNPMMYPLLLVF
MLITGILCLAGNFVTIWVFMNTKSLRTPANLLVVNLAMSDFLMMFTMFPPMMITCYYHTW
TLGATFCEVYAFLGNLCGCASIWTMVFITFDRYNVIVKGVAGEPLSTKKASLWILTVWVL
SFTWCVAPFFGWNRYVPEGNLTGCGTDYLSEDI--LSRSYLYIYSTW-VYFLPLAITIYC
YVFIIKAVAAHEKGMRDQAKKMGIKSLRNEEAQKTSAECRLAKIAMTTVALWFIAWTPYL
LINWVGM-FARSYLSPVYTIWGYVFAKANAVYNPIVYAIS--------------------
-----------------------------
>OPSD_CAMMA O18315 Rhodopsin (Fragment)
-----------------------------------LHMIHLHWYQYPPMNPMMYPLLLVF
MLITGILCLAGNFVTIWVFMNTKSLRTPANLLVVNLAMSDFLMMFTMFPPMMVTCYYHTW
TLGATFCQVYAFLGNLCGCASIWTMVFITFDRYNVIVKGVAGEPLSTKKASLWILTIWIL
SITWCIAPFFGWNRYVPEGN-TGCGTDYLSEDI--LSRSYLYIYSTW-VYFLPLAITIYC
HVFIIKAVAAHEKGMRDQAKKMGIKSLRNEEAQKTSAECRLAKIAMTTVALWFIAWTPYL
LINWVGM-FARSYLSPVYTIWGYVFAKANAVYNPIVYAIS--------------------
-----------------------------
>OPSD_CAMSC O16018 Rhodopsin (Fragment)
-----------------------------------LHMIHLHWYQYPPMNPMMYPLLLIF
MFITGIPCLAGNFVTIWVFMTTKSLRSPANLLVVNLAMSDFLMMFTMFPPMMITCYYHTW
TLGPTFCQVYAFLGNLFGCTSIWTMVFITFDRYNVIVKGVAGEPLSNKKAALWILSAWVL
SFSWCSAPFFGWNRYVPEGNLTGCGTDYLSEDA--LSRSYLYVYSVW-VYFLPLLITIYC
YVFIIKAVAAHEKGMRDQAKKMGIKSLRNEEAQKTSAECRLAKIAMTTVALWFIAWTPYL
LINWVGM-FARSYLSPVYTIWGYVFAKANAVYNPIVYAIS--------------------
-----------------------------
>OPSD_CANFA P32308 Rhodopsin
-----------------MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAY
MFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYF
VFGPTGCNVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVM
ALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEINNESF-VIYMFVVHFAIPMIVIFFC
YGQLVFTVKEAAAQQQ-------------ESATTQKAEKEVTRMVIIMVIAFLICWVPYA
SVAFYIFTHQGSDFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMIT---TLCCGKN
PLGDDEAS---ASASKT---ETSQVAPA-
>OPSD_CARAU P32309 Rhodopsin
-----------------MNGTEGDMFYVPMSNATGIVRSPYDYPQYYLVAPWAYACLAAY
MFFLIITGFPVNFLTLYVTIEHKKLRTPLNYILLNLAISDLFMVFGGFTTTMYTSLHGYF
VFGRVGCNPEGFFATLGGEMGLWSLVVLAFERWMVVCKPVSNFRFGENHAIMGVVFTWFM
ACTCAVPPLVGWSRYIPEGMQCSCGVDYYTRPQAYNNESF-VIYMFIVHFIIPLIVIFFC
YGRLVCTVKEAAAQHE-------------ESETTQRAEREVTRMVVIMVIGFLICWIPYA
SVAWYIFTHQGSEFGPVFMTLPAFFAKTAAVYNPCIYICMNKQFRHCMIT---TLCCGKN
PFEEEEGASTTASKTEASSVSSSSVSPA-
>OPSD_CATBO Q17296 Rhodopsin
MMSIASGPSHAAYTWTAQGGGFGNQTVVDKVPPEMLHLVDAHWYQFPPMNPLWHAILGFV
IGILGMISVIGNGMVIYIFTTTKSLRTPSNLLVINLAISDFLMMLSMSPAMVINCYYETW
VLGPLVCELYGLTGSLFGCGSIWTMTMIAFDRYNVIVKGLSAKPMTINGALLRILGIWFF
SLGWTIAPMFGWNRYVPEGNMTACGTDYLTKDL--LSRSYILVYSFF-CYFLPLFLIIYS
YFFIIQAVAAHEKNMREQAKKMNVASLRSAENQSTSAECKLAKVALMTISLWFMAWTPYL
VINYAGI-FETVKINPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFQRFPSLACSSG
PAGADTLSTTTTVTE-------GTEKPAA
>OPSD_CHELB Q9YGZ8 Rhodopsin
-----------------MNGTEGPYFYIPMVNTTGIVRSPYEYPQYYLVNPAAYAALGAY
MFLLILVGFPVNFLTLYVTLEHKKLRTPLNYILLNLAVADLFMVLGGFTTTMYTSMHGYF
VLGRLGCNVEGFFATLGGEIALWSLVVLAIERWVVVCKPISNFRFSEDHAIMGLAFTWVM
ASACAVPPLVGWSRYIPEGMQCSCGIDYYTRAEGFNNESF-VIYMFVCHFLIPLVVVFFC
YGRLLCAVKEAAAAQQ-------------ESETTQRAEREVSRMVVIMVVAFLVCWCPYA
GVAWYIFTHQGSEFGPLFMTFPAFFAKSSSIYNPMIYICMNKQFRHCMIT---TLCCGKN
PFEEEEGASTT-SKTEASSVSSSSVSPA-
>OPSD_CHICK P22328 Rhodopsin
-----------------MNGTEGQDFYVPMSNKTGVVRSPFEYPQYYLAEPWKFSALAAY
MFMLILLGFPVNFLTLYVTIQHKKLRTPLNYILLNLVVADLFMVFGGFTTTMYTSMNGYF
VFGVTGCYIEGFFATLGGEIALWSLVVLAVERYVVVCKPMSNFRFGENHAIMGVAFSWIM
AMACAAPPLFGWSRYIPEGMQCSCGIDYYTLKPEINNESF-VIYMFVVHFMIPLAVIFFC
YGNLVCTVKEAAAQQQ-------------ESATTQKAEKEVTRMVIIMVIAFLICWVPYA
SVAFYIFTNQGSDFGPIFMTIPAFFAKSSAIYNPVIYIVMNKQFRNCMIT---TLCCGKN
PLGDEDTS---AGKTETSSVSTSQVSPA-
>OPSD_COMDY O42327 Rhodopsin (Fragment)
----------------------------------------------YLVNPAAYAALGAY
MFLLILIGFPVNFLTLYVTLEHKKLRTPLNYILLNLAVADLFMVLGGFTTTMYTSMHGYF
VLGRLGCNLEGFFATLGGEIALWSLVVLAIERWIVVCKPISNFRFTEDHAIMGLAFSWVM
ALSCSVPPLVGWSRYIPEAMQCSCGVDYYTRAEGFNTESF-VLYMFTVHFLIPLSVIFFC
YGRLLCAVKEAAAAQQ-------------ESETTQRSEKEVSRMVVLMVIGFLVCWLPYA
STAWWIFCNQGSEFGPVFMTIPAFFAKSSAIYNPMIYICMNKQFRHCMI-----------
-----------------------------
>OPSD_CORAU Q90305 Rhodopsin (Fragment)
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-----------------------CGIDYYTRAPGYNNESF-VIYMFIVHFLIPLFIISFC
YGNLLCAVKAAAAAQE-------------ESETTQRAEREVTRMVIMMVISYLVSWVPYA
SVAWYIFSNQGSEFGPVFMTIPAFFAKSSALYNPLIYVLMNKQFRHCM------------
-----------------------------
>OPSD_COTBO O42307 Rhodopsin (Fragment)
----------------------------------------------YLVNPAAYAALGAY
MFLLILIGFPINFLTLYVTLEHKKLRTPLNYILLNLAVGNLFMVLGGFTTTMYTSMHGYF
VLGRLGCNLEGFFATLGGEIALWSLVVLAIERWIVVCKPISKFRFTEDHAIMGLAFSWVM
GLACAVPPLVGWSRYIPEGMKCSCGVDYYTRAEGFNNESF-VIYMFIVHFLIPLSVIFFC
YGRLLCAVKEAAAAQQ-------------ESETTQRAEKEVSRMVVIMVIGFLVCWLPYA
SVAWWIFCNQGSDFGPIFMTLPSFFAKRPAIYNPMIYICMNKQFRHCMI-----------
-----------------------------
>OPSD_COTGR O42328 Rhodopsin (Fragment)
----------------------------------------------YLVNPAAYAAPGAY
MFLLILVGFPVNFLTLYVTLEHKKLRTPLNYILLNLAVADLFMVLGGFTTTMYTSMHGYF
VLGRLGCNLEGFFATLGGEIALWSLVVLAIERWIVVCKPISNFRFTEDHAIMGLAFSWVM
ALTCAVPPLVGWSRYIPEGMQCSCGVDYYTRAEGFNNESF-VIYMFIVHFLIPLSNNFFC
YGRLLCAVKEAAAAQQ-------------ESETTQRAEREVSRMVVMMVVSFLMCWLPYA
SVAWYIFCNQGSEFGPIFMTLPAFFAKSSAIYNPLIYICMNKHVRHCMI-----------
-----------------------------
>OPSD_COTIN O42330 Rhodopsin (Fragment)
----------------------------------------------YLVNPAAYAALGAY
MFLLILIGFPVNFLTLYVTIEHKKLRTPLNYILLNLAVANLFMVLGGFTTTMYTSMHGYF
VLGRLGCNLEGFFATMGGEIALWSLVVLAIERWIVVCKPISNFRFTEDHAIMGLAFTWVM
ALSCAVPPLVGWSRYIPEGMQCSCGVDYYTRAEGFNNESF-VIYMFIVHFLTPLIIISFC
YGRLLCAVKEAAAAQQ-------------ESETTQRAEREVSRMVVMMVISFLMCWLPYA
SVAWYIFCNQGSEFGPIFMTLPAFFAKSSAIYNPLIYICMNKQFRHCMI-----------
-----------------------------
>OPSD_COTKE Q90373 Rhodopsin (Fragment)
----------------------------------------------YLVSPAGYAALGAY
MFLLILVGFPVNFLTLYVTLEHKKLRTPLNYILLNLAVADLFMVLGGFTTTMYTSMHGYF
VLGRLGCNLEGFFVTLGGEIALWSLVVLAIERWIGVFKSIRNFRFTEDHAIMGLGFSWVM
AATCAVPPLVGWLRYIPEGMQCSCGVDYYTRAEGFNNESF-VIYMFIVHFLIPLIVIFFC
YGRLLCAVKEAAAAQQ-------------ESETTQRAEKEVSRMVVIMVIGYLVCWLPYA
SVAWWIFCNQGSEFGPIFMTLPAFFAKSPAIYNPLIYICMNKQFPHCMI-----------
-----------------------------
>OPSD_CRIGR P28681 Rhodopsin
-----------------MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAY
MFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYF
VFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVICKPMSNFRFGENHAIMGVVFTWIM
ALACAAPPLVGWSRYIPEGMQCSCGVDYYTLKPEVNNESF-VIYMFVVHFTIPLIVIFFC
YGQLVFTVKEAAAQQQ-------------ESATTQKAEKEVTRMVILMVVFFLICWFPYA
GVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLT---TLCCGKN
ILGDDEAS---ATASKT---ETSQVAPA-
|