/usr/share/EMBOSS/test/data/gmod-sonic1.gff3 is in emboss-test 6.4.0-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 | ##gff-version 3
#
#Nesting Features
#
#Many genomic features are discontinuous and have multiple
#subparts. GFF3 represents such features by linking the parts
#together with the Parent tag. For example, to represent an mRNA
#transcript that has five exons, we could write this:
#
#The first feature is an mRNA that extends from position 1300 to 9000
#in genomic coordinates. It has an ID of "mrna0001" and a
#human-readable name of "sonichedgehog" (note that the ID and the Name
#are not the same thing). This is followed by five exon features, each
#of which is linked to the mRNA using a Parent tag. When GBrowse
#displays this transcript, it will display each of the exons linked
#together by a solid line. The entire set can be found by searching
#for the name "sonichedgehog."
#
ctg123 . mRNA 1300 9000 . + . ID=mrna0001;Name=sonichedgehog
ctg123 . exon 1300 1500 . + . ID=exon00001;Parent=mrna0001
ctg123 . exon 1050 1500 . + . ID=exon00002;Parent=mrna0001
ctg123 . exon 3000 3902 . + . ID=exon00003;Parent=mrna0001
ctg123 . exon 5000 5500 . + . ID=exon00004;Parent=mrna0001
ctg123 . exon 7000 9000 . + . ID=exon00005;Parent=mrna0001
|