/usr/share/EMBOSS/test/data/ecoli6s.aln is in emboss-test 6.4.0-2.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 | CLUSTAL W (1.83) multiple sequence alignment
X01238.1/1-183 AUUUCUCUGAGAUGUUCGCAAGCGGGC-CAGUCCCCUGAGCCGAUAUUUCAUACCACAAG
AL627277.1/1086 AUUUCUCUGAGAUGUUUGCAAGCGGGC-CAGUCCCCUGAGCCGAUAUUUCAUACCACAAG
AJ414145.1/9099 AUUUCUCUGAGGUGUUUGCCAGCGGGC-CAGUCCCCUGAGCCGAUAUUUAAUACCAACAG
U32767.1/6538-6 -AUUACCUGGAGUGUUCGUCAGUAGGC-UAUGUCCCUGAGCCGAUACUUUAAAUCUUAUA
AE006208.1/8365 -AUUACCUGAGGUGUUUGCCAGUGGGU-UAUGUCCCUGAGCCGAUACUUU-UAUUUUAUG
Y00334.1/77-254 CGCUCCCUGGUGUGUUGGCCAGUCGGU-GAUGUCCCUGAGCCGAUAACUGCAACAAC--G
AE004317.1/5626 UUUACCCUGGGGUGUUCGUCAGCGGAUUUAUGUCCCUGAGCCGAUAAGCAACAUAAC--A
X01238.1/1-183 AAUGUGGCGCUCCGCGGUUGGUGAGCAUGCUCGGUCCGU---------------CCGAGA
AL627277.1/1086 AAUGUGGCGCUCCGCGGUUGGUGAGCAUGCUCGGUUCGU---------------CCGAGA
AJ414145.1/9099 AAUGUAGUGCUCCGUAACCGGUGAGCAUGCUCGGUCCG----------------CCGAGA
U32767.1/6538-6 AAUU-GGUUUCCUAUCGUUGGUGUGUAGGCUUAACCUUUGACUCGUUCAUUGGGCUAAGA
AE006208.1/8365 AAUC-GGUUUCUAAUUGUUGGUGUGCAUGCUUAGCUUGA---------------CUAAGA
Y00334.1/77-254 GAGGUUGC-CAGUUGGACCGGUGUGCAUGUCCGCACG-----------------ACGGAA
AE004317.1/5626 GGGUUGGUAUUGGGUAGCUAUUGAGCAAGCUCGGCUUGUA--------------CCGAGA
X01238.1/1-183 AGCCUUAAAACUGCGACGACACAUUCACCUUGAACCAA-GGGUUCAAGGGUUACAGCCUG
AL627277.1/1086 AGCCUUAAAACUGUGACGACACAUUCACCUUGAACCAA-GGGUUCAAGGGUUACAGCCUG
AJ414145.1/9099 AGCCUUAAGGUUGCGACGCUGCGUUCACCUUGAACCAA-GGGUUCAAGGGUUACAGCCUG
U32767.1/6538-6 AACCUGAAAACGGUAUCAACUGAUUU-CCUUGAACCGUCGGGUUCAAGGACUACUGCCCG
AE006208.1/8365 AGCCUAAAAAUAGUUAUAACUGAUUC-CCUUGAACCGUUGGGUUCAAGGACUGAGACUUG
Y00334.1/77-254 AGCCUUAAGGUCUAC-UGCAACCGCCACCUUGAACUUUCGGGUUCAAGGGCUA-ACCCGA
AE004317.1/5626 AGCCUGCGGUUACCAUUACUGAUCCG-CCUUGAACCUGAUGGUUCAAGGGCUACGAUCCU
X01238.1/1-183 CGGCGGCA-UC-UCGGAG-AUUC
AL627277.1/1086 CGGCGGCA-UC-UCGGAG-AUUC
AJ414145.1/9099 CGACGGCA-CC-UCGGAG-AUCC
U32767.1/6538-6 CAGCGGCACUC-UGGGGU-CUUC
AE006208.1/8365 CAGCGGCA-UC-UCGGGUUCUUC
Y00334.1/77-254 CAGCGGCA-CGACCGGGG-AGCU
AE004317.1/5626 CAACGGCA-UC-CCGGGG-UUC-
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