/usr/share/EMBOSS/test/data/dna.phylip3 is in emboss-test 6.4.0-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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MSFM1 ACGTACGTAC GTACGTACGT ACGTACGTAC GTACGTACGT ACGTACGTAC
GTACGTACGT ACGTACGTAC GTACGTACGT ACGTACGTAC GTACGTACGT
ACGTACGTAC GTACGTACGT
MSFM2 ACGTACGTAC GTACGTACGT ----ACGTAC GTACGTACGT ACGTACGTAC
GTACGTACGT ACGTACGTAC GTACGTACGT ACGTACGTAC GTACGTACGT
ACGTACGTTG CAACGTACGT
MSFM3 ACGTACGTAC GTACGTACGT ACGTACGTAC GTACGTACGT CGTACGTACG
TACGTACGTA CGTACGTACG TACGTACGTA ACGTACGTAC GTACGTACGT
ACGTACGTAC GTACGTACGT
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