/usr/share/EMBOSS/test/data/acn78416.genpept is in emboss-test 6.4.0-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 | LOCUS ACN78416 225 aa linear BCT 21-MAR-2009
DEFINITION galactosyltransferase A [Pasteurella multocida].
ACCESSION ACN78416
VERSION ACN78416.1 GI:224999306
DBSOURCE accession FJ755839.1
KEYWORDS .
SOURCE Pasteurella multocida
ORGANISM Pasteurella multocida
Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales;
Pasteurellaceae; Pasteurella.
REFERENCE 1 (residues 1 to 225)
AUTHORS Boyce,J.D., Harper,M., St Michael,F., John,M., Aubry,A., Parnas,H.,
Logan,S.M., Wilkie,I.W., Ford,M., Cox,A.D. and Adler,B.
TITLE Identification of novel glycosyltransferases required for assembly
of the Pasteurella multocida A:1 lipopolysaccharide and their
involvement in virulence
JOURNAL Infect. Immun. 77 (4), 1532-1542 (2009)
PUBMED 19168738
REFERENCE 2 (residues 1 to 225)
AUTHORS Harper,M., John,M., Adler,B. and Boyce,J.
TITLE Direct Submission
JOURNAL Submitted (17-FEB-2009) Microbiology, Monash University, Wellington
road, Clayton, Melbourne, Victoria 3800, Australia
COMMENT Method: conceptual translation supplied by author.
FEATURES Location/Qualifiers
source 1..225
/organism="Pasteurella multocida"
/strain="VP161"
/serotype="1"
/db_xref="taxon:747"
/note="serogroup: A"
Protein 1..225
/product="galactosyltransferase A"
/function="adds beta-D-galactose to both the 4 and 6
position of alpha-L,D-heptose IV"
/name="putative bi-functional galactosyltransferase; GatA"
Region 5..188
/region_name="Glyco_transf_25"
/note="Glycosyltransferase family 25 [lipooligosaccharide
(LOS) biosynthesis protein] is a family of
glycosyltransferases involved in LOS biosynthesis. The
members include the beta(1,4) galactosyltransferases: Lgt2
of Moraxella catarrhalis, LgtB and LgtE of...; cd06532"
/db_xref="CDD:133474"
CDS 1..225
/gene="gatA"
/coded_by="FJ755839.1:1..678"
/transl_table=11
ORIGIN 1 mklpkiivis lknsprrqii shrlsglgld feffdavygk dltkeeleki dyeffpkycg
61 skgaltlgei gcamshikiy ehivannleq viileddaiv slyfeeivla alqklpnrre
121 ilfldhgkak vypfmrnlpe ryrlaryrkp skhskrfivr ttaylitleg akkllkhayp
181 irmpsdfltg llqlthinay giepscvfgg veseinemer raglk
//
|