/usr/share/EMBOSS/test/data/aaindex1.test is in emboss-test 6.4.0-2.
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D Normalized frequency of beta-turn (Chou-Fasman, 1978a)
R LIT:2004003a PMID:354496
A Chou, P.Y. and Fasman, G.D.
T Empirical predictions of protein conformation
J Ann. Rev. Biochem. 47, 251-276 (1978)
C PALJ810106 0.977 TANS770110 0.956 CHAM830101 0.946
CHOP780203 0.940 CHOP780216 0.929 CHOP780210 0.921
ROBB760113 0.907 GEIM800108 0.899 QIAN880133 0.897
QIAN880132 0.896 LEVM780103 0.893 PRAM900104 0.891
LEVM780106 0.890 ROBB760108 0.887 BEGF750103 0.885
ISOY800103 0.885 CRAJ730103 0.882 GEIM800111 0.878
PALJ810105 0.868 ROBB760110 0.863 NAGK730103 0.827
QIAN880131 0.824 AURR980114 -0.803 BEGF750101 -0.803
QIAN880107 -0.809 KANM800103 -0.824 AURR980109 -0.837
SUEM840101 -0.845
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.66 0.95 1.56 1.46 1.19 0.98 0.74 1.56 0.95 0.47
0.59 1.01 0.60 0.60 1.52 1.43 0.96 0.96 1.14 0.50
//
H CHOP780201
D Normalized frequency of alpha-helix (Chou-Fasman, 1978b)
R PMID:364941
A Chou, P.Y. and Fasman, G.D.
T Prediction of the secondary structure of proteins from their amino
acid sequence
J Adv. Enzymol. 47, 45-148 (1978)
C PALJ810102 0.981 ROBB760101 0.969 ISOY800101 0.959
KANM800101 0.956 MAXF760101 0.956 TANS770101 0.947
BURA740101 0.917 GEIM800101 0.912 KANM800103 0.912
LEVM780104 0.886 NAGK730101 0.886 PALJ810101 0.881
QIAN880106 0.874 LEVM780101 0.873 PRAM900102 0.873
GEIM800104 0.868 RACS820108 0.868 AURR980108 0.867
AURR980109 0.859 AURR980112 0.856 CRAJ730101 0.851
QIAN880107 0.843 BEGF750101 0.841 QIAN880105 0.835
AURR980114 0.828 AURR980115 0.816 AURR980110 0.814
PALJ810109 0.814 AURR980111 0.813 ROBB760103 0.806
MUNV940101 -0.802 CRAJ730103 -0.808 ROBB760113 -0.811
MUNV940102 -0.812 CHAM830101 -0.828 NAGK730103 -0.837
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
1.42 0.98 0.67 1.01 0.70 1.11 1.51 0.57 1.00 1.08
1.21 1.16 1.45 1.13 0.57 0.77 0.83 1.08 0.69 1.06
//
H CHOP780202
D Normalized frequency of beta-sheet (Chou-Fasman, 1978b)
R PMID:364941
A Chou, P.Y. and Fasman, G.D.
T Prediction of the secondary structure of proteins from their amino
acid sequence
J Adv. Enzymol. 47, 45-148 (1978)
C PALJ810104 0.970 LIFS790101 0.947 KANM800102 0.945
PALJ810103 0.937 ROBB760106 0.931 LEVM780105 0.930
GEIM800107 0.929 QIAN880120 0.915 PTIO830102 0.913
QIAN880121 0.911 LIFS790103 0.908 GEIM800105 0.890
ROBB760105 0.885 NAGK730102 0.858 QIAN880119 0.855
CHOP780208 0.851 GEIM800106 0.839 KANM800104 0.839
LEVM780102 0.833 PRAM900103 0.833 NISK860101 0.832
SWER830101 0.823 CHOP780209 0.822 PALJ810112 0.815
PONP800108 0.809 PALJ810110 0.808 MANP780101 0.805
VENT840101 0.805 VINM940102 -0.810 OOBM770103 -0.820
GEIM800110 -0.824 VINM940101 -0.831 MUNV940103 -0.892
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.83 0.93 0.89 0.54 1.19 1.10 0.37 0.75 0.87 1.60
1.30 0.74 1.05 1.38 0.55 0.75 1.19 1.37 1.47 1.70
//
H CHOP780203
D Normalized frequency of beta-turn (Chou-Fasman, 1978b)
R PMID:364941
A Chou, P.Y. and Fasman, G.D.
T Prediction of the secondary structure of proteins from their amino
acid sequence
J Adv. Enzymol. 47, 45-148 (1978)
C CHOP780216 0.979 CHOP780101 0.940 TANS770110 0.940
LEVM780106 0.935 GEIM800111 0.933 ISOY800103 0.933
CHAM830101 0.931 PRAM900104 0.928 QIAN880132 0.928
LEVM780103 0.927 GEIM800108 0.925 CHOP780210 0.918
QIAN880133 0.915 PALJ810106 0.907 PALJ810105 0.878
QIAN880131 0.861 QIAN880134 0.838 RACS770101 0.827
QIAN880135 0.811 QIAN880119 -0.814 PONP800107 -0.818
SUEM840101 -0.892
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.74 1.01 1.46 1.52 0.96 0.96 0.95 1.56 0.95 0.47
0.50 1.19 0.60 0.66 1.56 1.43 0.98 0.60 1.14 0.59
//
H CHOP780204
D Normalized frequency of N-terminal helix (Chou-Fasman, 1978b)
R PMID:364941
A Chou, P.Y. and Fasman, G.D.
T Prediction of the secondary structure of proteins from their amino
acid sequence
J Adv. Enzymol. 47, 45-148 (1978)
C ROBB760102 0.911
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
1.29 0.44 0.81 2.02 0.66 1.22 2.44 0.76 0.73 0.67
0.58 0.66 0.71 0.61 2.01 0.74 1.08 1.47 0.68 0.61
//
H CHOP780205
D Normalized frequency of C-terminal helix (Chou-Fasman, 1978b)
R PMID:364941
A Chou, P.Y. and Fasman, G.D.
T Prediction of the secondary structure of proteins from their amino
acid sequence
J Adv. Enzymol. 47, 45-148 (1978)
C ROBB760104 0.841 QIAN880109 0.806
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
1.20 1.25 0.59 0.61 1.11 1.22 1.24 0.42 1.77 0.98
1.13 1.83 1.57 1.10 0.00 0.96 0.75 0.40 0.73 1.25
//
H CHOP780206
D Normalized frequency of N-terminal non helical region (Chou-Fasman, 1978b)
R PMID:364941
A Chou, P.Y. and Fasman, G.D.
T Prediction of the secondary structure of proteins from their amino
acid sequence
J Adv. Enzymol. 47, 45-148 (1978)
C
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.70 0.34 1.42 0.98 0.65 0.75 1.04 1.41 1.22 0.78
0.85 1.01 0.83 0.93 1.10 1.55 1.09 0.62 0.99 0.75
//
H CHOP780207
D Normalized frequency of C-terminal non helical region (Chou-Fasman, 1978b)
R PMID:364941
A Chou, P.Y. and Fasman, G.D.
T Prediction of the secondary structure of proteins from their amino
acid sequence
J Adv. Enzymol. 47, 45-148 (1978)
C
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.52 1.24 1.64 1.06 0.94 0.70 0.59 1.64 1.86 0.87
0.84 1.49 0.52 1.04 1.58 0.93 0.86 0.16 0.96 0.32
//
H CHOP780208
D Normalized frequency of N-terminal beta-sheet (Chou-Fasman, 1978b)
R PMID:364941
A Chou, P.Y. and Fasman, G.D.
T Prediction of the secondary structure of proteins from their amino
acid sequence
J Adv. Enzymol. 47, 45-148 (1978)
C NAGK730102 0.860 CHOP780202 0.851 ROBB760106 0.846
LIFS790101 0.820 QIAN880119 0.807 KANM800102 0.804
QIAN880120 0.800
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.86 0.90 0.66 0.38 0.87 1.65 0.35 0.63 0.54 1.94
1.30 1.00 1.43 1.50 0.66 0.63 1.17 1.49 1.07 1.69
//
H CHOP780209
D Normalized frequency of C-terminal beta-sheet (Chou-Fasman, 1978b)
R PMID:364941
A Chou, P.Y. and Fasman, G.D.
T Prediction of the secondary structure of proteins from their amino
acid sequence
J Adv. Enzymol. 47, 45-148 (1978)
C PALJ810104 0.849 CHOP780202 0.822 VENT840101 0.817
PTIO830102 0.814 QIAN880121 0.809
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.75 0.90 1.21 0.85 1.11 0.65 0.55 0.74 0.90 1.35
1.27 0.74 0.95 1.50 0.40 0.79 0.75 1.19 1.96 1.79
//
H CHOP780210
D Normalized frequency of N-terminal non beta region (Chou-Fasman, 1978b)
R PMID:364941
A Chou, P.Y. and Fasman, G.D.
T Prediction of the secondary structure of proteins from their amino
acid sequence
J Adv. Enzymol. 47, 45-148 (1978)
C CHOP780101 0.921 CHOP780203 0.918 CHAM830101 0.905
PALJ810106 0.905 CHOP780216 0.896 GEIM800108 0.896
GEIM800111 0.867 TANS770110 0.858 LEVM780103 0.852
QIAN880132 0.852 PRAM900104 0.850 ISOY800103 0.829
QIAN880131 0.826 QIAN880133 0.820 NAGK730103 0.814
LEVM780106 0.812 PALJ810105 0.803 BEGF750101 -0.804
RICJ880111 -0.804 RICJ880107 -0.818 PONP800107 -0.820
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.67 0.89 1.86 1.39 1.34 1.09 0.92 1.46 0.78 0.59
0.46 1.09 0.52 0.30 1.58 1.41 1.09 0.48 1.23 0.42
//
H CHOP780211
D Normalized frequency of C-terminal non beta region (Chou-Fasman, 1978b)
R PMID:364941
A Chou, P.Y. and Fasman, G.D.
T Prediction of the secondary structure of proteins from their amino
acid sequence
J Adv. Enzymol. 47, 45-148 (1978)
C ROBB760112 0.841
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.74 1.05 1.13 1.32 0.53 0.77 0.85 1.68 0.96 0.53
0.59 0.82 0.85 0.44 1.69 1.49 1.16 1.59 1.01 0.59
//
H CHOP780212
D Frequency of the 1st residue in turn (Chou-Fasman, 1978b)
R PMID:364941
A Chou, P.Y. and Fasman, G.D.
T Prediction of the secondary structure of proteins from their amino
acid sequence
J Adv. Enzymol. 47, 45-148 (1978)
C PALJ810106 0.801
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.060 0.070 0.161 0.147 0.149 0.074 0.056 0.102 0.140 0.043
0.061 0.055 0.068 0.059 0.102 0.120 0.086 0.077 0.082 0.062
//
H CHOP780213
D Frequency of the 2nd residue in turn (Chou-Fasman, 1978b)
R PMID:364941
A Chou, P.Y. and Fasman, G.D.
T Prediction of the secondary structure of proteins from their amino
acid sequence
J Adv. Enzymol. 47, 45-148 (1978)
C TANS770104 0.954 ISOY800104 0.916 QIAN880134 0.870
QIAN880135 0.851 MUNV940104 0.836 FINA910102 0.832
MUNV940105 0.826 BUNA790101 -0.822 BLAM930101 -0.824
PTIO830101 -0.835
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.076 0.106 0.083 0.110 0.053 0.098 0.060 0.085 0.047 0.034
0.025 0.115 0.082 0.041 0.301 0.139 0.108 0.013 0.065 0.048
//
H CHOP780214
D Frequency of the 3rd residue in turn (Chou-Fasman, 1978b)
R PMID:364941
A Chou, P.Y. and Fasman, G.D.
T Prediction of the secondary structure of proteins from their amino
acid sequence
J Adv. Enzymol. 47, 45-148 (1978)
C ISOY800105 0.923 TANS770105 0.862
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.035 0.099 0.191 0.179 0.117 0.037 0.077 0.190 0.093 0.013
0.036 0.072 0.014 0.065 0.034 0.125 0.065 0.064 0.114 0.028
//
H CHOP780215
D Frequency of the 4th residue in turn (Chou-Fasman, 1978b)
R PMID:364941
A Chou, P.Y. and Fasman, G.D.
T Prediction of the secondary structure of proteins from their amino
acid sequence
J Adv. Enzymol. 47, 45-148 (1978)
C ROBB760111 0.825
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.058 0.085 0.091 0.081 0.128 0.098 0.064 0.152 0.054 0.056
0.070 0.095 0.055 0.065 0.068 0.106 0.079 0.167 0.125 0.053
//
H CHOP780216
D Normalized frequency of the 2nd and 3rd residues in turn (Chou-Fasman, 1978b)
R PMID:364941
A Chou, P.Y. and Fasman, G.D.
T Prediction of the secondary structure of proteins from their amino
acid sequence
J Adv. Enzymol. 47, 45-148 (1978)
C CHOP780203 0.979 GEIM800111 0.955 LEVM780106 0.953
LEVM780103 0.952 PRAM900104 0.951 CHAM830101 0.942
GEIM800108 0.942 QIAN880133 0.939 QIAN880132 0.931
TANS770110 0.930 CHOP780101 0.929 ISOY800103 0.921
PALJ810106 0.904 QIAN880134 0.900 CHOP780210 0.896
QIAN880135 0.884 PALJ810105 0.881 QIAN880131 0.873
NAGK730103 0.819 QIAN880120 -0.800 FAUJ880102 -0.807
KANM800103 -0.808 QIAN880107 -0.808 ROBB760103 -0.841
PTIO830101 -0.855 SUEM840101 -0.874
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.64 1.05 1.56 1.61 0.92 0.84 0.80 1.63 0.77 0.29
0.36 1.13 0.51 0.62 2.04 1.52 0.98 0.48 1.08 0.43
//
H KYTJ820101
D Hydropathy index (Kyte-Doolittle, 1982)
R LIT:0807099 PMID:7108955
A Kyte, J. and Doolittle, R.F.
T A simple method for displaying the hydropathic character of a protein
J J. Mol. Biol. 157, 105-132 (1982)
C CHOC760103 0.964 JANJ780102 0.922 DESM900102 0.898
EISD860103 0.897 CHOC760104 0.889 WOLR810101 0.885
RADA880101 0.884 MANP780101 0.881 EISD840101 0.878
PONP800103 0.870 NAKH920108 0.868 JANJ790101 0.867
JANJ790102 0.866 PONP800102 0.861 MEIH800103 0.856
PONP800101 0.851 PONP800108 0.850 WARP780101 0.845
RADA880108 0.842 ROSG850102 0.841 DESM900101 0.837
BIOV880101 0.829 RADA880107 0.828 CIDH920104 0.824
KANM800104 0.824 LIFS790102 0.824 MIYS850101 0.821
RADA880104 0.819 NAKH900111 0.817 NISK800101 0.812
FAUJ830101 0.811 ARGP820103 0.806 ARGP820102 0.803
NAKH920105 0.803 KRIW790101 -0.805 CHOC760102 -0.838
MONM990101 -0.842 GUYH850101 -0.843 RACS770102 -0.844
JANJ780103 -0.845 ROSM880101 -0.845 PRAM900101 -0.850
JANJ780101 -0.852 GRAR740102 -0.859 MEIH800102 -0.871
ROSM880102 -0.878 OOBM770101 -0.899
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
1.8 -4.5 -3.5 -3.5 2.5 -3.5 -3.5 -0.4 -3.2 4.5
3.8 -3.9 1.9 2.8 -1.6 -0.8 -0.7 -0.9 -1.3 4.2
//
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