/usr/share/EMBOSS/test/data/Makefile is in emboss-test 6.4.0-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 | # Makefile.in generated by automake 1.11.1 from Makefile.am.
# test/data/Makefile. Generated from Makefile.in by configure.
# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation,
# Inc.
# This Makefile.in is free software; the Free Software Foundation
# gives unlimited permission to copy and/or distribute it,
# with or without modifications, as long as this notice is preserved.
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
# PARTICULAR PURPOSE.
pkgincludedir = $(includedir)/EMBOSS
pkglibdir = $(libdir)/EMBOSS
pkglibexecdir = $(libexecdir)/EMBOSS
am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
install_sh_DATA = $(install_sh) -c -m 644
install_sh_PROGRAM = $(install_sh) -c
install_sh_SCRIPT = $(install_sh) -c
INSTALL_HEADER = $(INSTALL_DATA)
transform = $(program_transform_name)
NORMAL_INSTALL = :
PRE_INSTALL = :
POST_INSTALL = :
NORMAL_UNINSTALL = :
PRE_UNINSTALL = :
POST_UNINSTALL = :
build_triplet = x86_64-pc-linux-gnu
host_triplet = x86_64-pc-linux-gnu
subdir = test/data
DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
$(top_srcdir)/m4/axis2c.m4 $(top_srcdir)/m4/general.m4 \
$(top_srcdir)/m4/hpdf.m4 $(top_srcdir)/m4/idxdbs.m4 \
$(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \
$(top_srcdir)/m4/libtool.m4 $(top_srcdir)/m4/ltoptions.m4 \
$(top_srcdir)/m4/ltsugar.m4 $(top_srcdir)/m4/ltversion.m4 \
$(top_srcdir)/m4/lt~obsolete.m4 $(top_srcdir)/m4/mysql.m4 \
$(top_srcdir)/m4/pkg.m4 $(top_srcdir)/m4/pngdriver.m4 \
$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
$(top_srcdir)/configure.in
am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
$(ACLOCAL_M4)
mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
CONFIG_HEADER = $(top_builddir)/ajax/core/config.h
CONFIG_CLEAN_FILES =
CONFIG_CLEAN_VPATH_FILES =
SOURCES =
DIST_SOURCES =
am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
am__vpath_adj = case $$p in \
$(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
*) f=$$p;; \
esac;
am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
am__install_max = 40
am__nobase_strip_setup = \
srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
am__nobase_strip = \
for p in $$list; do echo "$$p"; done | sed -e "s|$$srcdirstrip/||"
am__nobase_list = $(am__nobase_strip_setup); \
for p in $$list; do echo "$$p $$p"; done | \
sed "s| $$srcdirstrip/| |;"' / .*\//!s/ .*/ ./; s,\( .*\)/[^/]*$$,\1,' | \
$(AWK) 'BEGIN { files["."] = "" } { files[$$2] = files[$$2] " " $$1; \
if (++n[$$2] == $(am__install_max)) \
{ print $$2, files[$$2]; n[$$2] = 0; files[$$2] = "" } } \
END { for (dir in files) print dir, files[dir] }'
am__base_list = \
sed '$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;s/\n/ /g' | \
sed '$$!N;$$!N;$$!N;$$!N;s/\n/ /g'
am__installdirs = "$(DESTDIR)$(pkgdatadir)"
DATA = $(pkgdata_DATA)
DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
pkgdatadir = $(prefix)/share/$(PACKAGE)/test/data
ACLOCAL = ${SHELL} /build/emboss-eYWzkj/emboss-6.4.0/missing --run aclocal-1.11
AJAX_FIXED_ROOT = \"/build/emboss-eYWzkj/emboss-6.4.0/emboss\"
AJAX_SYSTEM = \"Linux\"
AMTAR = ${SHELL} /build/emboss-eYWzkj/emboss-6.4.0/missing --run tar
AR = ar
AUTOCONF = ${SHELL} /build/emboss-eYWzkj/emboss-6.4.0/missing --run autoconf
AUTOHEADER = ${SHELL} /build/emboss-eYWzkj/emboss-6.4.0/missing --run autoheader
AUTOMAKE = ${SHELL} /build/emboss-eYWzkj/emboss-6.4.0/missing --run automake-1.11
AWK = mawk
AXIS2C_CFLAGS =
AXIS2C_CPPFLAGS =
AXIS2C_LDFLAGS =
AXIS2C_LIBS =
CC = gcc
CCDEPMODE = depmode=none
CFLAGS = -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -O2 -DDEBIAN -I/usr/lib/jvm/default-java/include -DHAVE_JAVA -I/usr/lib/jvm/default-java/include/linux -DNO_AUTH -D__amd64__
CPP = gcc -E
CPPFLAGS = -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2
CXX = g++
CXXCPP = g++ -E
CXXDEPMODE = depmode=none
CXXFLAGS = -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security
CYGPATH_W = echo
DEFS = -DHAVE_CONFIG_H
DEPDIR = .deps
DEVWARN_CFLAGS =
DLLTOOL = false
DSYMUTIL =
DUMPBIN =
ECHO_C =
ECHO_N = -n
ECHO_T =
EGREP = /bin/grep -E
EHAVEANT =
EMBOSS_TOP = /build/emboss-eYWzkj/emboss-6.4.0
ESYSTEMLIBS =
EXEEXT =
FGREP = /bin/grep -F
GREP = /bin/grep
HAVE_MEMMOVE =
HAVE_STRERROR =
INSTALL = /usr/bin/install -c
INSTALL_DATA = ${INSTALL} -m 644
INSTALL_PROGRAM = ${INSTALL}
INSTALL_SCRIPT = ${INSTALL}
INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
ISAIXIA64 =
ISCYGWIN =
JAVA_OK = yes
LD = /usr/bin/ld -m elf_x86_64
LDFLAGS = -Wl,-z,relro
LIBOBJS =
LIBS = -lm -lhpdf -lgd -lpng -lz -lm
LIBTOOL = $(SHELL) $(top_builddir)/libtool
LIPO =
LN_S = ln -s
LTLIBOBJS =
MAKEINFO = ${SHELL} /build/emboss-eYWzkj/emboss-6.4.0/missing --run makeinfo
MANIFEST_TOOL = :
MKDIR_P = /bin/mkdir -p
MYSQL_CFLAGS = -I/usr/include/mysql -DBIG_JOINS=1 -fno-strict-aliasing -g
MYSQL_CONFIG = /usr/bin/mysql_config
MYSQL_CPPFLAGS = -I/usr/include/mysql
MYSQL_LDFLAGS = -L/usr/lib/x86_64-linux-gnu -lmysqlclient -lpthread -lm -lrt -ldl
MYSQL_VERSION = 5.5.24
NEEDAJAX =
NM = /usr/bin/nm -B
NMEDIT =
OBJDUMP = objdump
OBJEXT = o
OTOOL =
OTOOL64 =
PACKAGE = EMBOSS
PACKAGE_BUGREPORT = emboss-bug@emboss.open-bio.org
PACKAGE_NAME = EMBOSS
PACKAGE_STRING = EMBOSS 6.4.0
PACKAGE_TARNAME = EMBOSS
PACKAGE_URL = http://emboss.sourceforge.net/
PACKAGE_VERSION = 6.4.0
PATH_SEPARATOR = :
PCRE_DATE = 11-Apr-2009
PCRE_LIB_VERSION = 0:1:0
PCRE_MAJOR = 7
PCRE_MINOR = 9
PCRE_POSIXLIB_VERSION = 0:0:0
PCRE_VERSION = 7.9
PG_CONFIG = /usr/bin/pg_config
PKG_CONFIG =
PKG_CONFIG_LIBDIR =
PKG_CONFIG_PATH =
POSIX_MALLOC_THRESHOLD = -DPOSIX_MALLOC_THRESHOLD=10
POSTGRESQL_CFLAGS =
POSTGRESQL_CPPFLAGS =
POSTGRESQL_LDFLAGS =
POSTGRESQL_VERSION = 9.1.4
RANLIB = ranlib
SED = /bin/sed
SET_MAKE =
SHELL = /bin/bash
STRIP = strip
VERSION = 6.4.0
WARN_CFLAGS =
XLIB = -lX11
XMKMF =
X_CFLAGS =
X_EXTRA_LIBS =
X_LIBS =
X_PRE_LIBS =
abs_builddir = /build/emboss-eYWzkj/emboss-6.4.0/test/data
abs_srcdir = /build/emboss-eYWzkj/emboss-6.4.0/test/data
abs_top_builddir = /build/emboss-eYWzkj/emboss-6.4.0
abs_top_srcdir = /build/emboss-eYWzkj/emboss-6.4.0
ac_ct_AR = ar
ac_ct_CC = gcc
ac_ct_CXX = g++
ac_ct_DUMPBIN =
am__include = include
am__leading_dot = .
am__quote =
am__tar = ${AMTAR} chof - "$$tardir"
am__untar = ${AMTAR} xf -
ant_in_path = false
bindir = /usr/lib/emboss
build = x86_64-pc-linux-gnu
build_alias = x86_64-linux-gnu
build_cpu = x86_64
build_os = linux-gnu
build_vendor = pc
builddir = .
datadir = ${datarootdir}
datarootdir = ${prefix}/share
docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
dvidir = ${docdir}
exec_prefix = ${prefix}
havejavac = yes
host = x86_64-pc-linux-gnu
host_alias =
host_cpu = x86_64
host_os = linux-gnu
host_vendor = pc
htmldir = ${docdir}
includedir = /usr/lib/emboss/include
infodir = ${prefix}/share/info
install_sh = ${SHELL} /build/emboss-eYWzkj/emboss-6.4.0/install-sh
javac_in_path = true
libdir = /usr/lib/emboss/lib
libexecdir = ${prefix}/lib/x86_64-linux-gnu
localedir = ${datarootdir}/locale
localstatedir = /var
mandir = ${prefix}/share/man
mkdir_p = /bin/mkdir -p
oldincludedir = /usr/include
pdfdir = ${docdir}
prefix = /usr
program_transform_name = s,x,x,
psdir = ${docdir}
sbindir = ${exec_prefix}/sbin
sharedstatedir = ${prefix}/com
srcdir = .
sysconfdir = /etc
target_alias =
top_build_prefix = ../../
top_builddir = ../..
top_srcdir = ../..
pkgdata_DATA = aaindex1.test prosite.dat prosite.doc prints.test withrefm \
site.dat cutg.codon \
dna.acedb dna.aln dna.asn1 dna.codata dna.embl dna.fasta \
dna.fitch dna.gcg dna.gcg8 dna.genbank dna.ig dna.m-acedb \
dna.m-codata dna.m-embl dna.m-fasta dna.m-fasta-long \
dna.m-ncbi dna.m-strider dna.msf dna.msf8 dna.ncbi \
dna.phylip dna.phylip3 dna.staden dna.strider dna.text \
feat.emft feat.fasta feat.pir \
mw1.dat mw2.dat mw3.dat \
paamir.gff paamir.gff3 paamir.pep pax6_cdna.fasta \
prot.acedb prot.codata prot.fasta prot.gcg prot.gcg8 \
prot.ig prot.m-acedb prot.m-codata prot.m-fasta prot.m-nbrf \
prot.m-ncbi prot.m-swiss prot.nbrf prot.ncbi prot.swiss \
prot.text z83307.seq 104k.nbrf \
aligna.dna alignapart.dna alignb.dna \
aligna.prot alignapart.prot alignb.prot \
nuc.pat nucseq.pat nucsimple.pat \
tranalign.pep tranalign.seq vtest.seq opsd.msf untrimmed.seq
all: all-am
.SUFFIXES:
$(srcdir)/Makefile.in: $(srcdir)/Makefile.am $(am__configure_deps)
@for dep in $?; do \
case '$(am__configure_deps)' in \
*$$dep*) \
( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
&& { if test -f $@; then exit 0; else break; fi; }; \
exit 1;; \
esac; \
done; \
echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu test/data/Makefile'; \
$(am__cd) $(top_srcdir) && \
$(AUTOMAKE) --gnu test/data/Makefile
.PRECIOUS: Makefile
Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
@case '$?' in \
*config.status*) \
cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
*) \
echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
esac;
$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
$(top_srcdir)/configure: $(am__configure_deps)
cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
$(ACLOCAL_M4): $(am__aclocal_m4_deps)
cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
$(am__aclocal_m4_deps):
mostlyclean-libtool:
-rm -f *.lo
clean-libtool:
-rm -rf .libs _libs
install-pkgdataDATA: $(pkgdata_DATA)
@$(NORMAL_INSTALL)
test -z "$(pkgdatadir)" || $(MKDIR_P) "$(DESTDIR)$(pkgdatadir)"
@list='$(pkgdata_DATA)'; test -n "$(pkgdatadir)" || list=; \
for p in $$list; do \
if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
echo "$$d$$p"; \
done | $(am__base_list) | \
while read files; do \
echo " $(INSTALL_DATA) $$files '$(DESTDIR)$(pkgdatadir)'"; \
$(INSTALL_DATA) $$files "$(DESTDIR)$(pkgdatadir)" || exit $$?; \
done
uninstall-pkgdataDATA:
@$(NORMAL_UNINSTALL)
@list='$(pkgdata_DATA)'; test -n "$(pkgdatadir)" || list=; \
files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
test -n "$$files" || exit 0; \
echo " ( cd '$(DESTDIR)$(pkgdatadir)' && rm -f" $$files ")"; \
cd "$(DESTDIR)$(pkgdatadir)" && rm -f $$files
tags: TAGS
TAGS:
ctags: CTAGS
CTAGS:
distdir: $(DISTFILES)
@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
list='$(DISTFILES)'; \
dist_files=`for file in $$list; do echo $$file; done | \
sed -e "s|^$$srcdirstrip/||;t" \
-e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
case $$dist_files in \
*/*) $(MKDIR_P) `echo "$$dist_files" | \
sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
sort -u` ;; \
esac; \
for file in $$dist_files; do \
if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
if test -d $$d/$$file; then \
dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
if test -d "$(distdir)/$$file"; then \
find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
fi; \
if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \
find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
fi; \
cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \
else \
test -f "$(distdir)/$$file" \
|| cp -p $$d/$$file "$(distdir)/$$file" \
|| exit 1; \
fi; \
done
check-am: all-am
check: check-am
all-am: Makefile $(DATA)
installdirs:
for dir in "$(DESTDIR)$(pkgdatadir)"; do \
test -z "$$dir" || $(MKDIR_P) "$$dir"; \
done
install: install-am
install-exec: install-exec-am
install-data: install-data-am
uninstall: uninstall-am
install-am: all-am
@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
installcheck: installcheck-am
install-strip:
$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
`test -z '$(STRIP)' || \
echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
mostlyclean-generic:
clean-generic:
distclean-generic:
-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES)
maintainer-clean-generic:
@echo "This command is intended for maintainers to use"
@echo "it deletes files that may require special tools to rebuild."
clean: clean-am
clean-am: clean-generic clean-libtool mostlyclean-am
distclean: distclean-am
-rm -f Makefile
distclean-am: clean-am distclean-generic
dvi: dvi-am
dvi-am:
html: html-am
html-am:
info: info-am
info-am:
install-data-am: install-pkgdataDATA
install-dvi: install-dvi-am
install-dvi-am:
install-exec-am:
install-html: install-html-am
install-html-am:
install-info: install-info-am
install-info-am:
install-man:
install-pdf: install-pdf-am
install-pdf-am:
install-ps: install-ps-am
install-ps-am:
installcheck-am:
maintainer-clean: maintainer-clean-am
-rm -f Makefile
maintainer-clean-am: distclean-am maintainer-clean-generic
mostlyclean: mostlyclean-am
mostlyclean-am: mostlyclean-generic mostlyclean-libtool
pdf: pdf-am
pdf-am:
ps: ps-am
ps-am:
uninstall-am: uninstall-pkgdataDATA
.MAKE: install-am install-strip
.PHONY: all all-am check check-am clean clean-generic clean-libtool \
distclean distclean-generic distclean-libtool distdir dvi \
dvi-am html html-am info info-am install install-am \
install-data install-data-am install-dvi install-dvi-am \
install-exec install-exec-am install-html install-html-am \
install-info install-info-am install-man install-pdf \
install-pdf-am install-pkgdataDATA install-ps install-ps-am \
install-strip installcheck installcheck-am installdirs \
maintainer-clean maintainer-clean-generic mostlyclean \
mostlyclean-generic mostlyclean-libtool pdf pdf-am ps ps-am \
uninstall uninstall-am uninstall-pkgdataDATA
# Tell versions [3.59,3.63) of GNU make to not export all variables.
# Otherwise a system limit (for SysV at least) may be exceeded.
.NOEXPORT:
|