This package is 3.6 MB.
It is available at http://ftp.debian.org/debian/pool/main/b/biomaj/biomaj_1.2.1-1_all.deb
.
View its full control file here:
debian/control.
biological data-bank updater
This package depends on:
debconf (>= 0.5) | debconf-2.0, ant, ant-contrib, ant-optional, junit4, libcommons-cli-java, libcommons-codec-java, libcommons-dbcp-java (>= 1.2), libcommons-httpclient-java, libcommons-logging-java, libcommons-net2-java (>= 2.2), libcommons-pool-java (>= 1.5), libgnujaf-java, libgnumail-java, libhsqldb-java, libjcommon-java (>= 1.0), libjets3t-java, libjgoodies-forms-java (>= 1.2), libjsch-java (>= 0.1.42), liblog4j1.2-java, libmysql-java, liboro-java (>= 2.0), default-jre | java6-runtime, debconf, libregexp-java (>= 1.4), libjdom1-java (>= 1.1), libsaxonb-java (>= 0.9), perl, mysql-server.
This package does not recommend any other package.
This package suggests:
ncbi-tools-bin, blast2.
This package does not conflict with any other package.
biomaj 1.2.1-1 is in debian - wheezy / main. This package's architecture is: architectureless.
| File | Mime Type | Owner | Mode | Size |
|---|---|---|---|---|
config
|
text/x-shellscript | N/A | N/A | 477 bytes |
postinst
|
text/x-shellscript | N/A | N/A | 1.4 KB |
postrm
|
text/x-shellscript | N/A | N/A | 950 bytes |
preinst
|
text/x-shellscript | N/A | N/A | 403 bytes |
prerm
|
text/x-shellscript | N/A | N/A | 724 bytes |
/etc/
|
root:root | 0o755 | ||
/etc/biomaj/
|
root:root | 0o755 | ||
/etc/biomaj/db_properties/
|
root:root | 0o755 | ||
/etc/biomaj/db_properties/admin/
|
root:root | 0o755 | ||
/etc/biomaj/db_properties/admin/alu.properties
|
text/plain | root:root | 0o644 | 1.1 KB |
/etc/biomaj/db_properties/admin/sts.properties
|
text/plain | root:root | 0o644 | 1.2 KB |
/etc/biomaj/general.conf
|
text/plain | root:root | 0o644 | 1.3 KB |
/etc/biomaj/unix_command_system.cfg
|
text/plain | root:root | 0o644 | 680 bytes |
/usr/
|
root:root | 0o755 | ||
/usr/bin/
|
root:root | 0o755 | ||
/usr/bin/biomaj
|
text/x-shellscript | root:root | 0o755 | 53 bytes |
/usr/share/
|
root:root | 0o755 | ||
/usr/share/biomaj/
|
root:root | 0o755 | ||
/usr/share/biomaj/bin/
|
root:root | 0o755 | ||
/usr/share/biomaj/bin/antRunAsync.sh
|
text/x-shellscript | root:root | 0o755 | 997 bytes |
/usr/share/biomaj/bin/biomaj.sh
|
text/x-shellscript | root:root | 0o755 | 4.4 KB |
/usr/share/biomaj/bin/Configurator.class
|
application/x-java-applet | root:root | 0o644 | 3.6 KB |
/usr/share/biomaj/bin/Configurator.java
|
text/x-c | root:root | 0o644 | 4.0 KB |
/usr/share/biomaj/bin/create_database.sh
|
text/x-shellscript | root:root | 0o755 | 905 bytes |
/usr/share/biomaj/bin/env.sh
|
text/x-shellscript | root:root | 0o755 | 147 bytes |
/usr/share/biomaj/bin/import_statefiles.old.sh
|
text/x-shellscript | root:root | 0o755 | 398 bytes |
/usr/share/biomaj/bin/import_statefiles.sh
|
text/x-shellscript | root:root | 0o755 | 710 bytes |
/usr/share/biomaj/bin/init_test.sh
|
text/x-shellscript | root:root | 0o755 | 3.5 KB |
/usr/share/biomaj/bin/migration.sh
|
text/x-shellscript | root:root | 0o755 | 2.5 KB |
/usr/share/biomaj/bin/shutdown_dbserver.sh
|
text/x-shellscript | root:root | 0o755 | 767 bytes |
/usr/share/biomaj/bin/start_dbserver.sh
|
text/x-shellscript | root:root | 0o755 | 1.4 KB |
/usr/share/biomaj/conf/
|
root:root | 0o755 | ||
/usr/share/biomaj/conf/process/
|
root:root | 0o755 | ||
/usr/share/biomaj/conf/process/biomaj_drmaa.pl
|
text/x-perl | root:root | 0o755 | 3.9 KB |
/usr/share/biomaj/conf/process/dbiblast.sh
|
text/x-shellscript | root:root | 0o755 | 699 bytes |
/usr/share/biomaj/conf/process/dbifasta.sh
|
text/x-shellscript | root:root | 0o755 | 639 bytes |
/usr/share/biomaj/conf/process/dbiflat.sh
|
text/x-shellscript | root:root | 0o755 | 647 bytes |
/usr/share/biomaj/conf/process/dbigcg.sh
|
text/x-shellscript | root:root | 0o755 | 638 bytes |
/usr/share/biomaj/conf/process/fastacmdTLSE.pl
|
text/x-perl | root:root | 0o755 | 16.0 KB |
/usr/share/biomaj/conf/process/formatdbTLSE.pl
|
text/x-perl | root:root | 0o755 | 26.8 KB |
/usr/share/biomaj/conf/process/indexSrsTLSE.pl
|
text/x-perl | root:root | 0o755 | 25.1 KB |
/usr/share/biomaj/conf/process/linkfile.sh
|
text/plain | root:root | 0o644 | 1.1 KB |
/usr/share/biomaj/conf/process/ProcessBiomajLib.pm
|
text/plain | root:root | 0o644 | 19.2 KB |
/usr/share/biomaj/conf/process/sendMailTLSE.pl
|
text/x-perl | root:root | 0o755 | 6.9 KB |
/usr/share/biomaj/conf/process/unix_command_system.cfg
|
root:root | 0o777 | ||
/usr/share/biomaj/console_help.txt
|
text/plain | root:root | 0o644 | 5.2 KB |
/usr/share/biomaj/general.conf
|
root:root | 0o777 | ||
/usr/share/biomaj/global.properties.tpl
|
text/plain | root:root | 0o600 | 2.2 KB |
/usr/share/biomaj/lib/
|
root:root | 0o755 | ||
/usr/share/biomaj/lib/biomaj.jar
|
application/java-archive | root:root | 0o644 | 485.4 KB |
/usr/share/biomaj/sql/
|
root:root | 0o755 | ||
/usr/share/biomaj/sql/hsql_addconstraints.sql
|
text/plain | root:root | 0o644 | 4.3 KB |
/usr/share/biomaj/sql/hsql_removeconstraints.sql
|
text/plain | root:root | 0o644 | 1.9 KB |
/usr/share/biomaj/sql/hsql.sql
|
text/plain | root:root | 0o644 | 14.1 KB |
/usr/share/biomaj/sql/hsql-to_1.2.sql
|
text/plain | root:root | 0o644 | 2.2 KB |
/usr/share/biomaj/sql/mysql.sql
|
text/plain | root:root | 0o644 | 14.6 KB |
/usr/share/biomaj/sql/mysql-to_1.2.sql
|
text/plain | root:root | 0o644 | 2.0 KB |
/usr/share/biomaj/workflows/
|
root:root | 0o755 | ||
/usr/share/biomaj/workflows/bank_statefile.xsd
|
text/plain | root:root | 0o644 | 16.1 KB |
/usr/share/biomaj/workflows/bank.xsd
|
text/xml | root:root | 0o644 | 7.2 KB |
/usr/share/biomaj/workflows/biomaj_common.xml
|
text/xml | root:root | 0o644 | 9.3 KB |
/usr/share/biomaj/workflows/handle_process.xml
|
text/xml | root:root | 0o644 | 2.7 KB |
/usr/share/biomaj/workflows/messages.properties
|
text/plain | root:root | 0o644 | 10.2 KB |
/usr/share/biomaj/workflows/mirror.xml
|
text/xml | root:root | 0o644 | 26.5 KB |
/usr/share/biomaj/workflows/process.xsd
|
text/xml | root:root | 0o644 | 2.9 KB |
/usr/share/biomaj/workflows/session.xsd
|
text/xml | root:root | 0o644 | 5.3 KB |
/usr/share/doc/
|
root:root | 0o755 | ||
/usr/share/doc-base/
|
root:root | 0o755 | ||
/usr/share/doc-base/biomaj
|
text/plain | root:root | 0o644 | 216 bytes |
/usr/share/doc/biomaj/
|
root:root | 0o755 | ||
/usr/share/doc/biomaj/biomaj.1
|
text/troff | root:root | 0o644 | 2.0 KB |
/usr/share/doc/biomaj/changelog.Debian.gz
|
application/gzip | root:root | 0o644 | 1.8 KB |
/usr/share/doc/biomaj/copyright
|
text/plain | root:root | 0o644 | 45.1 KB |
/usr/share/doc/biomaj/UsersGuide_BioMAJ_EN.odt.gz
|
application/gzip | root:root | 0o644 | 2.0 MB |
/usr/share/doc/biomaj/UsersGuide_BioMAJ_EN.pdf.gz
|
application/gzip | root:root | 0o644 | 1.0 MB |
/usr/share/lintian/
|
root:root | 0o755 | ||
/usr/share/lintian/overrides/
|
root:root | 0o755 | ||
/usr/share/lintian/overrides/biomaj
|
text/plain | root:root | 0o644 | 90 bytes |
/usr/share/man/
|
root:root | 0o755 | ||
/usr/share/man/man1/
|
root:root | 0o755 | ||
/usr/share/man/man1/biomaj.1.gz
|
application/gzip | root:root | 0o644 | 1.0 KB |
/var/
|
root:root | 0o755 | ||
/var/lib/
|
root:root | 0o755 | ||
/var/lib/biomaj/
|
root:root | 0o755 | ||
/var/lib/biomaj/migration/
|
root:root | 0o755 | ||
/var/lib/biomaj/migration/update.pl
|
text/x-perl | root:root | 0o755 | 3.6 KB |
/var/lib/biomaj/tmp/
|
root:root | 0o755 | ||
/var/log/
|
root:root | 0o755 | ||
/var/log/biomaj/
|
root:root | 0o755 |