/usr/share/avogadro/fragments/cyclic alkanes/cyclopentane.cml is in avogadro-data 1.0.3-5.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 | <?xml version="1.0"?>
<molecule xmlns="http://www.xml-cml.org/schema" id="cyclopentane.out">
<atomArray>
<atom id="a1" elementType="C" x3="-0.433900" y3="-1.908600" z3="-0.128800"/>
<atom id="a2" elementType="C" x3="-0.827100" y3="-0.428600" z3="0.043000"/>
<atom id="a3" elementType="C" x3="0.462900" y3="0.395200" z3="-0.120100"/>
<atom id="a4" elementType="H" x3="-1.591300" y3="-0.127200" z3="-0.690800"/>
<atom id="a5" elementType="H" x3="-1.269400" y3="-0.260000" z3="1.039900"/>
<atom id="a6" elementType="C" x3="1.624600" y3="-0.563100" z3="0.194200"/>
<atom id="a7" elementType="H" x3="0.546900" y3="0.777800" z3="-1.152200"/>
<atom id="a8" elementType="H" x3="0.470200" y3="1.274700" z3="0.542600"/>
<atom id="a9" elementType="C" x3="1.105700" y3="-1.983400" z3="-0.098000"/>
<atom id="a10" elementType="H" x3="2.518000" y3="-0.327100" z3="-0.404600"/>
<atom id="a11" elementType="H" x3="1.923100" y3="-0.472000" z3="1.253100"/>
<atom id="a12" elementType="H" x3="1.492800" y3="-2.346700" z3="-1.065000"/>
<atom id="a13" elementType="H" x3="1.453800" y3="-2.697200" z3="0.665700"/>
<atom id="a14" elementType="H" x3="-0.875200" y3="-2.525900" z3="0.670500"/>
<atom id="a15" elementType="H" x3="-0.822700" y3="-2.309600" z3="-1.079600"/>
</atomArray>
<bondArray>
<bond atomRefs2=" a7 a3" order=" 1"/>
<bond atomRefs2=" a15 a1" order=" 1"/>
<bond atomRefs2=" a12 a9" order=" 1"/>
<bond atomRefs2=" a4 a2" order=" 1"/>
<bond atomRefs2=" a10 a6" order=" 1"/>
<bond atomRefs2=" a1 a9" order=" 1"/>
<bond atomRefs2=" a1 a2" order=" 1"/>
<bond atomRefs2=" a1 a14" order=" 1"/>
<bond atomRefs2=" a3 a2" order=" 1"/>
<bond atomRefs2=" a3 a6" order=" 1"/>
<bond atomRefs2=" a3 a8" order=" 1"/>
<bond atomRefs2=" a9 a6" order=" 1"/>
<bond atomRefs2=" a9 a13" order=" 1"/>
<bond atomRefs2=" a2 a5" order=" 1"/>
<bond atomRefs2=" a6 a11" order=" 1"/>
</bondArray>
</molecule>
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