/usr/share/avogadro/fragments/coordination/4-tetrahedral.cml is in avogadro-data 1.0.3-5.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 | <molecule>
<atomArray>
<atom id="a1" elementType="C" x3="-0.242197" y3="0.199376" z3="-0.000000"/>
<atom id="a2" elementType="H" x3="0.897803" y3="0.199376" z3="-0.000000"/>
<atom id="a3" elementType="H" x3="-0.622737" y3="-0.875235" z3="-0.000000"/>
<atom id="a4" elementType="H" x3="-0.622062" y3="0.736873" z3="0.930806"/>
<atom id="a5" elementType="H" x3="-0.621882" y3="0.736618" z3="-0.931027"/>
</atomArray>
<bondArray>
<bond atomRefs2=" a1 a2" order=" 1"/>
<bond atomRefs2=" a1 a3" order=" 1"/>
<bond atomRefs2=" a1 a4" order=" 1"/>
<bond atomRefs2=" a1 a5" order=" 1"/>
</bondArray>
</molecule>
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